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ProteomicsCo-immuno precipitation of the aphid saliva protein Mp10 and the plant de-ubiquitinating enzyme AMSH2
This dataset corresponds to experiments described in the manuscript “The conserved aphid saliva chemosensory protein effector Mp10 targets plant AMSH deubiquitinases at cellular membranes to suppress pattern-triggered immunity”, and includes mass spectrometry analysis of Co-immuno-precipitation expe...
ORGANISM(S): Nicotiana benthamiana Myzus persicae 
2024-11-06 | PXD055941 | Pride
Effector Proteomics Aphid Plant immunity 
ProteomicsCo-immuno precipitation of the aphid saliva protein Mp10 and the plant de-ubiquitinating enzyme AMSH2
This dataset corresponds to experiments described in the manuscript “The conserved aphid saliva chemosensory protein effector Mp10 targets plant AMSH deubiquitinases at cellular membranes to suppress pattern-triggered immunity”, and includes mass spectrometry analysis of Co-immuno-precipitation expe...
ORGANISM(S): Nicotiana benthamiana Myzus persicae 
2024-11-06 | PXD057543 | Pride
Effector Proteomics Aphid Plant immunity 
ProteomicsArabidopsis Wdr8 interactors identification
To identify Arabidopsis Wdr8 interactors, immunoprecipitation associated LC-MS/MS analysis was carried out. Crude proteins extracted from Wdr8-GFP expressing transgenic plants was subjected to the immuno-precipitation assay using GFP antibody magnetic beads (µMACS GFP isolation kit, Miltenyi Biotec)...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-02-17 | PXD026063 | Pride
Gfp antibody coupled immunoprecipitation Arabidopsis seedlings Lc-ms/ms 
OtherSequence specific recognition of RNA hairpins by the SAM domain of Vts1
Identifying transcripts that are associated with the post transcriptional regulator Vts1 in yeast by co-immuno precipitation. Keywords: RNA pulldown, Co-IP
ORGANISM(S): Saccharomyces cerevisiae 
2006-03-24 | GSE3741 | GEO
ProteomicsThe chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans
In this study, a GFP-tagged version of the protein HCF-1 was immuno-precipitated from C. elegans lysates of the strain IU171 and co-purifying proteins were identified by LC-MS/MS. As a negative control, the same immuno-precipitation was conducted from wild-type (strain N2) worms that did not carry a...
ORGANISM(S): Caenorhabditis elegans 
2024-01-29 | PXD047509 | Pride
Lc-msms C. elegans Immuno precipitation 
ProteomicsHexokinase over-expression Co-immuno-precipitation in HepG2 cells Proteomics
HepG2 cells with HK1 overexpression and CoIP Mass spec
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-02-23 | MSV000088901 | MassIVE
Proteomics,Multiomicsp53-regulated networks of protein, mRNA, miRNA and lncRNA expression revealed by integrated pSILAC and NGS analyses
We determined the effect of p53 activation on de novo protein synthesis using quantitative proteomics of newly synthesized proteins (pulsed stable isotope labeling with amino acids in cell culture, pSILAC) in combination with mRNA and non-coding RNA expression analyses by next generation sequencing ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-05-24 | MSV000079767 | MassIVE
ProteomicsIdentification of new RhoGDI2 interactants by co-IP and MS
A co-precipitation experimental model was developed to identify proteins potentially physically associated with RhoGDI2. Cells expressing RhoGDI2 tagged with FLAG® M2 were generated. This tag was placed at either the C- or N-terminus to reduce the probability of missing potential partners specific t...
ORGANISM(S): Homo sapiens (Human) 
2025-11-27 | PXD069111 | Pride
Rhoa Centrosomes Rac1 Cdc42 Rhogdi2 Primary cilia 
GenomicsChIP-seq profiling of histone modifications (H3K4me3, H3K9ac, and H3K27me3) in seedling shoot tissues from 10 barley genotypes
ChIP-seq was performed to characterize histone modification landscapes and to enable comparative epigenomic analyses across the barley pangenome. Leaf tissues from seedling shoots of 10 barley genotypes were collected from plants grown under controlled conditions (16 h light/8 h dark, 20°C day/16°C ...
ORGANISM(S): Hordeum vulgare subsp. spontaneum 
2026-07-12 | E-MTAB-17344 | biostudies-arrayexpress
GenomicsTo examine the role of p300 in the SMARCA4–p53 regulatory axis, we performed ChIP-seq to assess p300, p53, H3K27ac, HDAC1, HDAC2 occupancy in BIN-67 cells
ChIP-seq was performed in BIN-67, BIN-67 p53ko, BIN-67 with SMARCA4 restoration and BIN-67 p53ko cells with SMARCA4 restoration to assess the impact of SMARCA4 and p53 on the pull downs of p300, H3K27ac, p53, HDAC1 and HDAC2.
ORGANISM(S): Homo sapiens 
2026-05-05 | E-MTAB-15700 | biostudies-arrayexpress
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