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ProteomicsAnalysis of Bacillus subtilis intracellular proteome under exposition to silver nanoparticles
Nanoparticles are more and more used in industrial process, food, medicinal or daily goods. At the end of their life, most of them are discharged in the environment where they impact the ecological equilibrium. Bacteria are one of the first targets of the nanoparticles in the environment. To evaluat...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. NCIB 3610 
2018-05-14 | PXD007128 | Pride
Bacillus subtilis Silver nanoparticles Nanolc-ms/ms 
TranscriptomicsA Toxoplasma dense granule protein, GRA24, modulates the early immune response to infection by promoting a direct and sustained host p38 MAPK activation
Toxoplasma gondii, the causative agent of toxoplasmosis, is an obligate intracellular protozoan parasite that resides inside a parasitophorous vacuole. During infection, Toxoplasma actively remodels the transcriptome of its hosting cells with profound and coupled impact on the host immune response. ...
ORGANISM(S): Mus musculus 
2013-09-01 | E-GEOD-38782 | biostudies-arrayexpress
ProteomicsGuidance landscapes unveiled by quantitative proteomics to control reinnervation in adult visual system
Long-distance regeneration of the central nervous system (CNS) has been achieved from the eye to the brain through activation of neuronal molecular pathways or pharmacological approaches. Characterizing the mature neuronal environment is essential to understand the adult axonal guidance in order to ...
ORGANISM(S): Mus musculus (Mouse) 
2022-10-20 | PXD029325 | Pride
Lc-ms/ms Qexactive hf Cns Mouse 
ProteomicsElucidating the diverse roles of acetyl-CoA in the cytosol and mitochondrion of Toxoplasma gondii
Acetyl-CoA is a key metabolite in all organisms, implicated in transcriptional regulation, post-translational modification as well as fuelling the TCA cycle and the synthesis and elongation of fatty acids. The obligate intracellular parasite Toxoplasma gondii possesses two enzymes which produce acet...
ORGANISM(S): Toxoplasma gondii RH 
2020-05-07 | PXD016133 | Pride
Metabolism Acetylome Acetyl-coa Toxoplasma gondii Nanolc-ms/ms 
ProteomicsHCMV-NEC analysis - Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus
Herpesviral capsids are assembled in the host cell nucleus before being translocated to the cytoplasm where they undergo further maturation. The crossing of nuclear envelope represents a major event that requires formation of the nuclear egress complex (NEC). We investigated the protein composition ...
ORGANISM(S): Homo sapiens (Human) Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) 
2014-06-30 | PXD000536 | Pride
Nuclear egress complex Coimmunoprecipitation Nanolc-msms Human cytomegalovirus 
ProteomicsTime-resolved phosphotyrosine-proteome of Src signaling
Intracellular signaling nodes can sample multiple inputs and induce different cellular outputs. High combinatorial between their numerous potential conformational intermediaries having distinct enzymatic activities and/or repertoire of partners makes it challenging to determine their dynamic coding ...
ORGANISM(S): Canis familiaris (Dog) (Canis lupus familiaris) 
2021-02-03 | PXD008534 | Pride
Src Phosphotyrosine Signaling Nanolc-ms/ms 
ProteomicsTgondii - Whole organism, iBAQ (Kloehnetal,bmcbiol2020)
abundance based on iBAQ, Interaction consistency score: 4.8, Coverage: 6
ORGANISM(S): 5811 
2020-00-00 | 2899534466 | PAXDB
TranscriptomicsHost cell subversion by Toxoplasma GRA16, a HAUSP- and PP2A-interacting protein exported to the host cell nucleus
Toxoplasma gondii multiplies inside a parasitophorous vacuole in the host cell. Several parasite proteins have been described that hijack host signaling pathways, which mostly originate from the rhoptry organelles. We report here the identification and characterization of GRA16, the first dense gran...
ORGANISM(S): Homo sapiens 
2013-02-06 | E-GEOD-38779 | biostudies-arrayexpress
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