Dentin - OmicsDI

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Unknown (1220)
Genomics (75)
Transcriptomics (71)
Proteomics (38)
Metabolomics (8)

Organisms

Homo sapiens (41)
Mus musculus (29)
Andropogon gerardi (27)
Bacteria (27)
Canis lupus familiaris (27)
Cnidaria (27)
Cricetulus griseus (27)
Eukaryota (27)
Fasciola (27)
Hepatitis B virus (27)
Human betaherpesvirus 5 (27)
Madurella mycetomatis (27)
Mesocricetus auratus (27)
Miscanthus x giganteus (27)
Mus musculus (27)
Streptococcus mutans UA159 (8)
Streptococcus mutans (4)
Drosophila melanogaster (2)
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human oral metagenome (1)
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Organisms

Mus musculus (15)
Homo sapiens (15)
human oral metagenome (4)
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Oryctolagus cuniculus (1)
oral metagenome (1)
Canis lupus familiaris (1)
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Ovis aries (1)

Repository

ENA (61)
biostudies-arrayexpress (38)
geo (37)
pride (27)
EGA (10)
MetaboLights (8)
iProX (5)
jPOST (3)
MassIVE (3)

Tissue

Dentin (11)
Tooth enamel (8)
Bone (5)
Cell culture (3)
Tooth (3)
Eukaryotic cell (2)
Saliva (2)
Stem cell (2)
Whole body (2)
Cementum (1)
Dental pulp cell (1)
Extracellular matrix (1)
Neuron (1)

Disease

Dentin caries (2)
Disease free (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (27)
Bottom-up proteomics (16)
Shotgun proteomics (11)
Data-dependent acquisition (8)
Mass spectrometry (6)
Mass spectrometry assay (2)
DiaPASEF (2)
Gel-based experiment (2)

Instrument Platform

Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 500 (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
BD FACS Aria II (1)
Nanostring GeoMx spatial profiler (1)
Illumina NovaSeq X (1)
NA (1)
Illumina MiSeq (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2026 (24)
2025 (23)
2023 (7)
2019 (7)
2015 (6)
2022 (6)
2012 (5)
2010 (5)
2008 (5)
2024 (5)
2021 (5)
2013 (4)
2011 (4)
2017 (4)
2014 (3)
2020 (3)
2016 (2)
2018 (1)
2009 (1)
2007 (1)

CHEBI ID

CHEBI:16708 (3)
CHEBI:17748 (3)
CHEBI:16958 (3)
CHEBI:18323 (3)
CHEBI:15698 (3)
CHEBI:16040 (3)
CHEBI:15727 (3)
CHEBI:17172 (3)
CHEBI:15318 (3)
CHEBI:17802 (3)
CHEBI:16750 (3)
CHEBI:16235 (3)
CHEBI:16450 (3)
CHEBI:17368 (3)
CHEBI:12060 (2)
CHEBI:2494 (2)
CHEBI:2030 (2)
CHEBI:18083 (2)
CHEBI:42539 (2)
CHEBI:16352 (2)
CHEBI:17319 (2)
CHEBI:68465 (2)
CHEBI:19227 (2)
CHEBI:17256 (2)
CHEBI:17164 (2)
CHEBI:28483 (2)
CHEBI:71464 (2)
CHEBI:46961 (2)
CHEBI:16892 (2)
CHEBI:61993 (2)

Metabolite Name

Xanthine (3)
Guanosine (3)
(2S)-2-(3,8-Dimethylazulen-5-yl)propanoic acid (2)
Leucomethylene blue (2)
1,3-Dithiole-2-thione (2)
1,3,11(13)-Eudesmatrien-12-oic acid (2)
Tamibarotene (2)
N-Acetyl-D-Galactosamine (2)
Phenylalanylleucine (2)
Cyheptamide (2)
Gly-Ile (2)
LysoPG(16:0/0:0) (2)
Norgestrel (2)
(S)-Laudanosine (2)
Leucylalanine (2)
3-hydroxypentadecanoic acid (2)
3-hydroxytridecanoic acid (2)
1,5-Anhydro-D-glucitol (2)
Pro-Leu (2)
Asp-Ile (2)
Trp-Leu (2)
L-Norleucine (2)
(R)-Pterosin B (2)
Beta-Alanine (2)
Phenol sulfate (2)
Betaine (2)
D-Glucose 6-Phosphate (2)
Norethindrone acetate (2)
Carnosine (2)
N-Acetylornithine (2)

First Public Date

2026 (13)
2025 (11)
2024 (8)
2023 (8)
2014 (6)
2021 (3)
2020 (3)
2018 (3)
2022 (2)
2019 (1)
2017 (1)
2016 (1)
2015 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (25)
Spatial transcriptomics by high-throughput sequencing (4)
RNA-seq of coding RNA (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (1)
Genotyping by array (1)

Release Date

2025 (164)
2022 (128)
2023 (127)
2021 (116)
2024 (103)
2020 (95)
2019 (72)
2018 (65)
2016 (58)
2014 (52)
2015 (50)
2017 (48)
2026 (31)
2013 (31)
2011 (28)
2012 (26)
2010 (20)
2009 (16)
2008 (15)
2007 (4)
2006 (3)
2005 (3)
2004 (2)
2003 (1)

Lab affiliation

University of Liverpool (4)
State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China (lab head) (2)
1 Univ. Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, F-33600 Pessac, France 2 Bordeaux Proteome Platform, University of Bordeaux, F-33000 Bordeaux, France (1)
BioArCh, University of York, UK (1)
Bioanalytical Mass Spectrometry Facility Mark Wainwright Analytical Centre University of NSW Australia (1)
Core Facility Proteomics, Department of Clinical Chemistry, Universitry Medical Center Göttingen, Germany (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Biology, University of Copenhagen, Denmark. (1)
Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology (1)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (1)
Genome and Stem Cell Center, Erciyes University, Turkiye (1)
Globe Institute, University of Copenhagen (1)
Globe Institute, University of Copenhagen, Denmark (1)
Hamdan Bin Mohammed College of Dental Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai Health, Dubai, UAE (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Institut de Biologia Evolutiva (Universitat Pompeu Fabra - CSIC); Dr. Aiguader 88, ES-08003, Barcelona (1)
Lundbeck Foundation GeoGenetics Centre, Natural History Museum of Denmark, University of Copenhagen, Denmark (1)
NIH/NIDCR (1)
PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Primary Investigator, Assistant Professor, Division of Biosciences, College of Dentistry, Ohio State University (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Belgium (1)
The Forsyth Institute (1)
University of Copenhagen (1)

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Human Archaeological Dentin as Source of Polar and Less Polar Metabolites for Untargeted Metabolomic Research: The Case of Yersinia pestis

Metabolomic approaches, such as in clinical applications of living individuals, have shown potential use for solving questions regarding the past when applied to archaeological material. Here, we study for the first time the potential of this Omic approach as applied to metabolites extracted from ar...

2024-03-15 | MTBLS7394 | MetaboLights

Proteomic analysis of human dentin matrix extracts by peptide-level high-pH reverse-phase fractionation

Proteomics research has increasingly focused on human cells, tissues, and fluids; however, comprehensive data regarding dental tissues remain limited. Dentin, a mineralized component of the tooth, contains structural proteins and bioactive molecules that, upon release, can modulate pulp cell acti...

ORGANISM(S): Homo sapiens (Human)

2026-03-23 | PXD070849 | Pride

Cyclophilin B deficiency causes abnormal dentin collagen matrix

To evaluate the effects of cyclophilin B deficiency on expression levels of collagen family members in dentin, we performed protein identification of cyclophilin B-WT, -Het, and -KO teeth after trypsin digestion.

ORGANISM(S): Mus Musculus (mouse)

2017-07-20 | PXD006021 | JPOST Repository

Proteomic analyse of equine tooth (dentin) ageing

This study investigates the proteomic profiles of horse tooth tissues, including pulp, dentin, cementum, and enamel, with a focus on the effects of age and disease. We analyzed tissue samples from young, old, and diseased teeth to explore how aging and disease influence protein expression across the...

ORGANISM(S): Equus caballus (Horse)

2026-05-13 | PXD065894 | Pride

Dentin Horse Tooth Ageing Lc-msms

Dentin

Dentin Raw sequence reads

PRJNA1444806 | ENA

Dentin Metatranscriptome

PRJNA1086832 | ENA

Ultrastructural organization of dentin in mice lacking dentin sialo-phosphoprotein.

Not available

S-EPMC4338995 | biostudies-literature

The dentin phosphoprotein repeat region and inherited defects of dentin.