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ProteomicsDIA/SWATH of the whole cell proteome of Mycobacterium tuberculosis
Untargeted DIA/SWATH of the whole cell proteome of Mycobacterium tuberculosis CRISPRi mutants
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2023-12-21 | PXD041697 | Pride
Dia Mycobacterium tuberculosis Tuberculosis Swath-ms Acid-sensing 
ProteomicsActivity-based SWATH/DIA proteomic screen enables sensitive differential detection of serine hydrolases from surgically resected OCT-embedded primary lung adenocarcinoma
Lung malignancies are among the leading causes of cancer-related death in the modern world. While the disease is relatively manageable if caught at an early stage, the genomic variability and high level of mutations represent a daunting challenge for diagnosis, staging and prognostic classification....
ORGANISM(S): Homo sapiens (Human) 
2025-06-02 | PXD019357 | Pride
Abpp Lung adenocarcinoma tissue Swath-ms 
ProteomicsDIA/SWATH-MS analysis of Halobacterium salinarum NRC-1 collected at four time points of batch culture growth
Data-Independent Acquisition (DIA) is a mass spectrometry-based method to reliably identify and reproducibly quantify large fractions of a target proteome. The peptide-centric data analysis strategy employed in DIA requires a priori generated spectral assay libraries. Such assay libraries allow to e...
ORGANISM(S): Halobacterium salinarum 
2023-09-21 | PXD042774 | Pride
Dia Data-independent acquisition Swath Halobacterium salinarum nrc-1 Spectral assay library Dda Data-dependent acquisition 
ProteomicsYeast proteomic analysis upon temperature shift
DIA/SWATH analysis of yeast upon temperature shift.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-06-28 | PXD016320 | Pride
Proteomics Dia S cerevisiae Swath Puf6 Yeast 
ProteomicsMicroflow SWATH data analysed with DIA-NN
We have developed DIA-NN, an integrated software suite for fully-automated processing of raw SWATH/DIA data. DIA-NN enables deep and confident proteome coverage with fast chromatographic methods, paving the way for a new generation of high-throughput proteomics. This data set illustrates the capabil...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2019-11-06 | PXD014690 | Pride
Gas-phase fractionation Dia K562 Swath Yeast Plasma High-throughput proteomics 
ProteomicsExploring the Metabolic Consequences of SARSCoV2 Infection A comprehensive IDA and SWATH DIA Lipidomics and Metabolomics dataset
In this work, we generated an extensive dataset describing the metabolome and lipidome of 39 SARS-CoV-2 infected patients versus age- and gender-matched 39 healthy controls. We implemented state of the art acquisition techniques including IDA and SWATH-DIA to ensure a holistic insight in the lipidom...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000092887 | MassIVE
UnknownDeep Spectral Library of Mice Retina for Myopia Research: Proteomics Dataset generated by SWATH and DIA-NN.
Not available
S-EPMC11467338 | biostudies-literature
ProteomicsProteome study to optimize Zeno SWATH DIA
Data-independent acquisition (DIA) techniques, such as SWATH acquisition, have emerged as the preferred strategy for proteomic analysis. Our study optimizes the SWATH-DIA method using a narrow isolation window placement approach improving its proteomic performance. We optimized the acquisition param...
ORGANISM(S): Homo Sapiens (human) Cellular Organisms Mus Musculus (mouse) 
2024-07-20 | PXD050030 | JPOST Repository
UnknownDIA/SWATH-Mass Spectrometry Revealing Melanoma Cell Proteome Transformations with Silver Nanoparticles: An Innovative Comparative Study.
Not available
S-EPMC11901134 | biostudies-literature
UnknownAge-Dependent Hippocampal Proteomics in the APP/PS1 Alzheimer Mouse Model: A Comparative Analysis with Classical SWATH/DIA and directDIA Approaches.
Not available
S-EPMC8304546 | biostudies-literature
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