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UnknownEvaluation of statistical approaches for differential metaproteomics.
Not available
S-EPMC12709467 | biostudies-literature
UnknownEvaluation of imputation and imputation-free strategies for differential abundance analysis in metaproteomics data.
Not available
S-EPMC12009712 | biostudies-literature
ProteomicsIsobaric Labeling Quantitative Metaproteomics for the Study of Gut Microbiome Response to Arsenic
Quantitative metaproteomics is a relatively new research field by applying proteomics technique to study microbial proteins of microbiome, and holds the great potential to truly quantify the functional proteins actually expressed by microbes in the biological environment such as gastrointestinal tra...
ORGANISM(S): Mus musculus (Mouse) 
2018-12-17 | PXD011735 | Pride
Isobaric labeling Metapro-iq Metaproteomics Gut microbiome Arsenic Tandem mass tags Label free 
ProteomicsDeep gut metaproteomics - A deep metaproteomics approach for the study of human microbiomes
Stool samples were collected from 4 children and subjected to deep gut metaproteomics analysis for in-depth understanding the functional compositions of human gut mcirobiome.
ORGANISM(S): human gut metagenome 
2017-08-10 | PXD005619 | Pride
Strain Microbiome Deep Metaproteomics 
ProteomicsPediatric IBD MLI metaproteomics
Mucosal-luminal interface (MLI) samples were collected from a cohort of children with new-onset IBD and microbial cells were harvested and processed for metaproteomic analysis. Deep metaproteomics data analysis was then performed for better understanding the MLI microbiota functions in the developme...
ORGANISM(S): human gut metagenome 
2018-08-03 | PXD007819 | Pride
Lc-msms Intestine Microbiome Ibd Children 
ProteomicsMetaproteomics reveals age-specific alterations of gut microbiome in hamsters with SARS-CoV-2 infection
The gut microbiome's pivotal role in health and disease is well-established. SARS-CoV-2 infection often causes gastrointestinal symptoms and is associated with changes of the microbiome in both human and animal studies. While hamsters serve as important animal models for coronavirus research, there ...
ORGANISM(S): Mesocricetus auratus (Golden hamster) 
2025-05-13 | PXD057158 | Pride
Metaproteomics Gut microbiome Data-independent acquisition Covid-19 
ProteomicsDifferential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics
A differential lysis approach was developed with different strength of lysis buffers (urea and/or sodium dodecyl sulfate) and applied on human stool samples to separate different microbial species to increase the depth of metaproteomic measurements. We showed that the lysates dominating by proteins ...
ORGANISM(S): Escherichia coli 
2023-03-27 | PXD016787 | Pride
Human Lc-msms Gut microbiome 
GenomicsPEAQ_MP
Extensive ground truth dataset for the assessment of differential expression analyses in metaproteomics
PRJEB105044 | ENA
UnknownMetaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes.
Not available
S-EPMC4128106 | biostudies-literature
ProteomicsFree-Flow Isoelectric Focusing Based Metaproteomics Workflow Facilitates the Identification and Characterization of Human Salivary Microbiome for Lung Cancer
We developed a free-flow isoelectric focusing (FFIEF) based metaproteomics workflow to reduce the host interferences and enrich the low-abundant bacteria for better interpretation of salivary microbiome. We firstly tested the pretreatment module that could significantly reduce the host interferences...
ORGANISM(S): human saliva metagenome 
2022-11-17 | PXD026727 | Pride
Taxonomy-function integration Lung cancer Metaproteomics Free-flow isoelectric focusing Salivary microbiome Dysbiosis 
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