Epididymal - OmicsDI

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Organisms

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Repository

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Tissue

Epididymal white adipose tissue (17)
Sperm (16)
Liver (10)
Liver (7)
Testis (7)
Adipose tissue (6)
Muscle (6)
Skeletal muscle (6)
White adipose tissue (6)
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Subcutaneous adipose tissue (5)
Brain (4)
Brain (4)
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Blood (3)
Caput epididymis (3)
Heart (3)
Kidney (3)
Spermatozoon (3)
Spleen (3)
Abdominal adipose tissue (2)
Epididymis (2)
Lung (2)
Epididymal fat (1)
Retroperitoneal fat (1)
Epididymal adipose (1)
Ventricles (1)
Epididymal fat (1)
Heart (1)
Sweat (1)

Disease

Obesity (4)
Type 2 diabetes mellitus (4)
Male infertility (3)
Diet induced obesity (1)
Lean control (1)
Alopecia (1)
Obesity (1)
Glaucoma (1)
Melanoma (1)

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Instrument Platform

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CHEBI ID

CHEBI:49033 (4)
CHEBI:15887 (4)
CHEBI:18107 (4)
CHEBI:16359 (4)
CHEBI:16704 (4)
CHEBI:15891 (4)
CHEBI:18257 (4)
CHEBI:17821 (4)
CHEBI:16040 (4)
CHEBI:17568 (4)
CHEBI:17268 (4)
CHEBI:15428 (4)
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CHEBI:32365 (3)
CHEBI:17992 (3)
CHEBI:60645 (3)
CHEBI:16755 (3)
CHEBI:17822 (3)
CHEBI:22660 (3)
CHEBI:18261 (3)
CHEBI:15753 (3)
CHEBI:18186 (3)
CHEBI:28757 (3)

Metabolite Name

Adenosine (5)
Cytosine (5)
Creatinine (5)
N-acetylhistidine (4)
Uracil (4)
Betaine (4)
Acetylcarnitine (4)
Spermidine (4)
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Creatine (4)
Glycerophosphocholine (4)
Hypoxanthine (4)
Moxonidine (3)
Guanidinoethyl sulfonate (3)
1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine (3)
Tobramycin (3)
Epothilone b (3)
Bacoside a (3)
Zerumbone (3)
Herbimycin a (3)
Terfenadine (3)
1-stearoyl-2-docosahexaenoyl-sn-glycerol (3)
3-dehydrocarnitine (3)
Alexidine (3)
Ebastine (3)
Penitrem a (3)
Prostaglandin g2 (3)
Sn-glycerol-3-phosphoethanolamine (3)
Cucurbitacin b (3)
Tomatidin (3)

First Public Date

2025 (66)
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2014 (55)
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2019 (34)
2022 (33)
2020 (28)
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2016 (14)
2013 (3)

Modification

Not available (1)

Study type

Transcription profiling by array (109)
RNA-seq of coding RNA (27)
RNA-seq of non coding RNA (10)
ChIP-seq (7)
Unknown experiment type (3)
MicroRNA profiling by array (3)
MeDIP-seq (2)
Animal - Single-cell sequencing (2)
Animal - High-throughput sequencing (2)
Bisulfite-seq (2)
RNA-seq of coding RNA from single cells (2)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

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2006 (6)
2005 (3)
2001 (2)
2004 (1)
2002 (1)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Hebei Key Laboratory of Metabolic Diseases (2)
1) Department of Cancer Biology, Dana–Farber Cancer Institute, Boston, MA, USA. 2) Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Boston University School of Medicine (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Centre de Recherches INRA Val de Loire UMR INRA85-CNRS7247-UFR-IFCE Plate-forme d'Analyse Intégrative des Biomolécules 37380 Nouzilly (1)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, Cologne, Germany. (1)
Colorado Center for Reproductive Medicine (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig Telefon +49 341 235 4767 | Fax +49 341 235 450823 (1)
Department of Animal Reproduction, Spanish National Institute for Agricultural and Food Research and Technology (INIA), Avda. Puerta de Hierro km 5.9, 28040 Madrid, Spain. (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark (1)
Department of Biological Sciences, Kent State University, Kent, OH, United States. (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, Germany (1)
Department of Immunology, College of Basic Medicine, Army Medical University (Third Military Medical University), Chongqing 400038, China. (1)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain (1)
Department of Medicine, Knight Cardiovascular Institute, Oregon Health & Sciences University, Portland, Oregon, USA (1)
Department of Obstetrics & Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Division of Nephrology, Department of Medicine, Massachusetts General Hospital and Harvard Medical School (1)
Dr.S.Shivaji's group Reproductive Biology group (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)
Faculdade de Medicina Veterinária de Lisboa (1)
Harvard Institutes of Medicine, BWH/Genetics 77 Avenue Louis Pasteur, Boston MA 02115, United States (1)
Harvard medical school (1)
HeBeiMedical Unviersity (1)
Institute of Immunology PLA, Army Medical University (Third Military Medical University), Chongqing 400038, China (1)
Institute of Metabolic Science, University of Cambridge (1)
Institute of Molecular and Cell Biology, ASTAR (1)

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Metabolomic Analysis of Cauda Epididymal Fluid in Yaks and Cattle

The epididymis is the primary organ responsible for sperm maturation, with its caudal region serving as the primary storage site for mature sperm. The unique small molecule metabolites present in the cauda epididymal fluid not only facilitate the long-term storage of sperm but also ensure their s...

2025-09-29 | MTBLS13067 | MetaboLights

Lipidomics analysis for aged mice epididymal adipose tissue (part-I)

Not available

ORGANISM(S): Mus musculus

ST001063 | MetabolomicsWorkbench

Dynamic sperm proteome remodelling during epididymal maturation in a marsupial, Macropus giganteus

While assisted reproductive technologies (ARTs) are widely used in domestic animals, successful implementation of ARTs to conserve wildlife species remains challenging. In macropods, crucial aspects of fundamental reproductive biology, including changes induced by epididymal maturation, remain unkno...

ORGANISM(S): Macropus giganteus

2025-09-29 | PXD064577 | Pride

Chronic inflammation drives epididymal tertiary lymphoid structure formation and autoimmune fertility disorders

We characterized the sperm proteins recognized by the antibodies in mouse serum and epididymal fluid after immune tolerance disruption by performing mass spectrometry-based label-free quantitative proteomics. For this, we immunoprecipitated sperm cell protein extractions with serum and epididymal fl...

ORGANISM(S): Mus musculus (Mouse)

2025-07-10 | PXD062944 | Pride

Autoanti-sperm antibodies Serum Treg depletion Immune tolerance Epididymal fluid

Chronic inflammation drives epididymal tertiary lymphoid structure formation and autoimmune fertility disorders

ORGANISM(S): Mus musculus (Mouse)

2025-07-10 | PXD058247 | Pride

Autoanti-sperm antibodies Serum Treg depletion Immune tolerance Epididymal fluid

The adult boar testicular and epididymal transcriptomes

Background - Mammalians gamete production takes place in the testis but when they exit this organ, although spermatozoa have a specialized and distinct morphology, they are immotile and infertile. It is only after their travel in the epididymis that sperm acquire their motility and fertility. Epidid...

ORGANISM(S): Sus scrofa

2010-06-24 | E-GEOD-15614 | biostudies-arrayexpress

Analysis of epididymal sperm maturation by top-down mass spectrometry

Spermatozoa Top-down analyses of different epididymal regions to identify endogenous biomolecules.

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2014-12-16 | PXD001303 | Pride

Boar Epididymal spermatozoa Top-down

Transcription profiling of of human epididymal gene expression in the caput epididymides of infertile and fertile patients

Caput epididymides biopsies from 4 patients suffering from non-obstructive azoospermia and from 4 patients with active spermatogenesis were compared. 414 genes in the caput epididymides were differentially regulated in infertile men by at least a 2-fold change as compared to the fertile men. Experim...

ORGANISM(S): Homo sapiens

2008-06-16 | E-GEOD-9194 | biostudies-arrayexpress

Transcription profiling of rat epididymal fat tissues from diet induced obesity model against lean controls

Analysis of gene expression profiles of epididymal fat from DIO rats; We applied a comparative functional genomics approach to evaluate diet-induced obese (DIO) rats as an obesity model Experiment Overall Design: Gene expression profiles from DIO and lean rats were generated and compared. A private ...

ORGANISM(S): Rattus norvegicus

2009-04-23 | E-GEOD-8700 | biostudies-arrayexpress

Epididymal Adipose Tissue Profiling In HMDP

Identify genes in the epididymal adipose tissue whose expression is under genetic regulation in the hybrid mouse diversity panel. The hybrid mouse diversity panel is comprised of classical inbred and recombinant inbred wild type mice. The RMA values of genes were used for genome wide association a...

ORGANISM(S): Mus musculus

2013-01-09 | E-GEOD-42890 | biostudies-arrayexpress

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