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Proteomicsimmunoprecipitation-mass spectrometry (IP-MS) of FDR-1
immunoprecipitation-mass spectrometry (IP-MS)of FDR-1
ORGANISM(S): Caenorhabditis elegans 
2025-08-07 | PXD066847 | Pride
Fdr-1 ip-ms 
ProteomicsIP-to-MS: an unbiased workflow for antigen profiling
Immunoprecipitation is among the most widely utilized methods in biomedical research, with applications that include the identification of antibody targets and associated proteins. The path to identifying these targets is not straightforward, however, and often requires the use of chemical crosslink...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD056617 | Pride
Autoimmune disease Mass spectrometry Unbiased antigen identification Immunoprecipitation 
ProteomicsProtein binder based IP-MS of SLC12A6 (KCC3) in Hek293WT OE cell lines
Specific protein binders with high affinity, such as antibodies or nanobodies, are scarce for most solute carrier (SLCs) transporters. Moreover, general approaches that can systematically generate binders for multi-transmembrane proteins, such as SLCs, channels or GPCRs, are still missing. Purifying...
ORGANISM(S): Homo sapiens (Human) 
2024-06-17 | PXD046995 | Pride
Human Ip-ms Slc12a6 (kcc3) Protein binders 
ProteomicsIntegrator complex subunit 7 (INTS7) immunocoprecipitation (IP) LC-MS/MS
To identify proteins that interact with INTS7 in BM-MSCs, IP experiments were performed and subjected to three independently LC-MS/MS analysis and Label-free quantification
ORGANISM(S): Mus musculus (Mouse) 
2022-02-16 | PXD028817 | Pride
Mouse Ints7 Ip Lc-ms/ms 
ProteomicsIP-MS analysis of the human INO80 complex composition and interactome
The project aimed to investigate the composition/interactome of the human INO80 complex. To this end, INO80B - a core INO80 complex subunit - was endogenously tagged with V5 epitope tag at its C terminus in MCF-7 cells, and co-immunoprecipitation followed by LC-MS/MS analysis was performed using ant...
ORGANISM(S): Homo sapiens (Human) 
2023-12-10 | PXD020712 | Pride
Ip-ms Ino80 
ProteomicsHRD1 IP-MS in WT and SEL1L deficiency HEK293T cells
To gain further insights into the role and importance of SEL1L in HRD1 ERAD, we performed unbiased proteomics LC-MS analyses to map SEL1L and HRD1 interactomes in WT and SEL1L-/-, WT and HRD1-/- HEK293T cells, respectively.
ORGANISM(S): Homo sapiens (Human) 
2024-01-10 | PXD043674 | Pride
Erad complex formation Sel1l-hrd1 erad Hek293t 
ProteomicsProteomics data of GFP::PGL-3 IP-MS compared to GFP control
We carried out immunoprecipitation-mass spectrometry (IP-MS) analysis to identify the protein components of PGL granules in heat-stressed embryos. GFP::PGL-3 proteins were immunoprecipitated from extracts of embryos grown at 26 oC and the interacting proteins were identified by LC-MS/MS. Proteins in...
ORGANISM(S): Caenorhabditis elegans 
2023-04-01 | PXD040246 | Pride
Gfp::pgl-3 Ip-ms C.elegans Pgl granules 
ProteomicsUV-inducible crosslinking IP-MS to elucidate the role of nuclear Hsp104 during quiescence in Saccharomyces cerevisiae
In this study, we utilize high-content microscopy screening and quantitative proteomics to establish a function of nuclear Hsp104 during aging. We find that the cytosolic-nuclear partitioning of Hsp104 is critical to maintain nuclear proteostasis in quiescent cells. Whereas high global translation r...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2024-01-12 | PXD043093 | Pride
P-benzoyl-l-phenylalanine Yeast Quiescence Uv-inducible crosslinking Nuclear protein quality control Ip-ms Ageing Co-immunoprecipitation Lc-ms/ms Translation Hsp104 Proteomics Disaggregation 
ProteomicsP53 IP-MS in Ovarian clear cell carcinoma
Ovarian cancer (OC) is a highly fatal and refractory malignancy affecting women, with platinum resistance remaining a major clinical dilemma. Ovarian clear cell carcinoma (OCCC) frequently exhibits increased platinum refractoriness than the other OC subtypes, accompanied by heightened glycogen that ...
ORGANISM(S): Homo sapiens (Human) 
2026-09-14 | PXD057846 | Pride
Ip-ms Ovarian clear cell carcinoma P53 
ProteomicsLabel-free DDA proteome for identifying the interacting proteins of HBO1
HBO1 is an important transcriptional activator for organism to respond to natural stress. Here, we performed IP-MS for determining the interacting proteins of HBO1 under stimulation of BHB.
ORGANISM(S): Homo sapiens (Human) 
2025-07-04 | PXD051692 | Pride
Human Label-free Ip-ms Hbo1 
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