Fisher Brian B - OmicsDI

Show results for

Transcriptomics (39)
Proteomics (19)
Unknown (13)
Metabolomics (5)
Genomics (4)

Organisms

Homo sapiens (24)
Mus musculus (14)
Malus domestica (2)
Picea glauca (2)
Rattus norvegicus (2)
Macaca mulatta (2)
Ictalurus punctatus x Ictalurus furcatus (1)
Populus balsamifera (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Bacillus anthracis (1)
Zea mays (1)
Rattus rattus (1)
Salmo salar (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Cavia porcellus (1)
Oryctolagus cuniculus (1)
Pseudomonas aeruginosa N002 (1)
Rousettus aegyptiacus (1)

Repository

biostudies-arrayexpress (43)
pride (16)
MetaboLights (5)
EGA (1)
jPOST (1)
MassIVE (1)

Tissue

Epithelial cell (4)
Blood serum (3)
Fibroblast (2)
Lung (2)
Macrophage (2)
Blood (1)
Cardiac muscle cell (1)
Cell culture (1)
Cerebrospinal fluid (1)
Cytotoxic T-lymphocyte (1)
Heart (1)
Neutrophil (1)
Ovarian serous carcinoma cell (1)
Pancreas (1)
Permanent cell line cell (1)
Skeletal muscle (1)
Skeletal muscle myoblast (1)
Skin (1)
Stromal cell (1)

Disease

Emphysema (1)
Iron deficiency anemia (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Pancreatic ductal carcinoma (1)
Prostate adenocarcinoma (1)
Systolic heart failure (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (10)
Mass spectrometry (5)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Velos (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Orbitrap Elite (Thermo Scientific) (1)
Q Exactive (1)

Publication Date

2015 (9)
2014 (7)
2022 (6)
2012 (6)
2013 (5)
2026 (4)
2017 (4)
2016 (4)
2021 (4)
2025 (3)
2019 (2)
2010 (2)
2009 (2)
2024 (2)
2020 (2)
2011 (1)
2007 (1)
2023 (1)
2018 (1)

CHEBI ID

CHEBI:15318 (2)
CHEBI:16235 (2)
CHEBI:16610 (2)
CHEBI:16708 (2)
CHEBI:16919 (2)
CHEBI:17050 (2)
CHEBI:17084 (2)
CHEBI:17148 (2)
CHEBI:17368 (2)
CHEBI:17431 (2)
CHEBI:17568 (2)
CHEBI:18127 (2)
CHEBI:18186 (2)
CHEBI:26806 (2)
CHEBI:30769 (2)
CHEBI:37998 (2)
CHEBI:6650 (2)
CHEBI:83058 (2)
CHEBI:86260 (2)
CHEBI:10072 (1)
CHEBI:10362 (1)
CHEBI:10642 (1)
CHEBI:111517 (1)
CHEBI:131388 (1)
CHEBI:131434 (1)
CHEBI:131454 (1)
CHEBI:131623 (1)
CHEBI:131654 (1)
CHEBI:131655 (1)
CHEBI:131658 (1)

Metabolite Name

AMP (2)
Agmatine (2)
Cadaverine (2)
Putrescine (2)
Spermidine (2)
(R)-salsolinol (1)
1,3,7-trimethylurate (1)
1,3-diaminopropane (1)
1,3-dimethylurate (1)
1,3-propanediol (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-linoleoyl-GPE (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenine (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylhypoxanthine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (1)
1-palmitoyl-2-(9,10-epoxystearoyl)phosphatidylcholine (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (11)
ChIP-chip by tiling array (3)
ChIP-seq (3)
RNA-seq of non coding RNA (2)
Human - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2015 (9)
2014 (7)
2012 (6)
2021 (6)
2013 (5)
2016 (4)
2024 (4)
2017 (3)
2019 (2)
2010 (2)
2009 (2)
2026 (1)
2022 (1)
2011 (1)
2007 (1)
2020 (1)
2018 (1)

Lab affiliation

Cancer Research UK Manchester Institute Systems Oncology (1)
Department of Chemistry and Biochemistry Montana State University (1)
Department of Microbiology and Immunology and Biomedical Instrumentation Center, Uniformed Services University of the Health Sciences, Bethesda, Maryland, 20814 (1)
Director of Women’s Health Research Women’s Service Line Inova Health System Chief Scientific Officer Gynecologic Cancer Center of Excellence John P. Murtha Cancer Center Research Program Uniformed Services University of the Health Sciences (1)
Director, Division of Neonatology Department of Pediatrics Center for Neurobehavioral Development University of Minnesota (1)
Division of Cardiology Johns Hopkins University School of Medicine Ross Research Building, Room 847 720 Rutland Avenue Baltimore, MD 21205 Phone: 410-614-0027 Email: dbrianfoster@jhmi.edu Web: http://web1.johnshopkins.edu/fosterlab (1)
Johns Hopkins School of Medicine, Division of Cardiology (1)
Lab Director, One Health Institute Laboratory (1)
MSD Singapore (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
One Health Institute, University of California, Davis (1)
Physiology, University of Galway, Ireland (1)
Pulmonary, Allergy, Critical Care, and Sleep Division Medicine Department University of Minnesota - TC Minneapolis, MN (1)
Pulmonary, Critical Care, and Sleep Medicine Veterans Affairs Medical Center, Minneapolis, MN Pulmonary, Critical Care, and Sleep Medicine University of Minnesota, Minneapolis, MN (1)
School of Medicine and Medical Science, Conway Institute of Biomolecular and Biomedical Research, University College Dublin (1)
University of California San Diego (1)

Previous page
1 / 8
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 8
Next page

Sort by:

Relevance

Page size

Host and parasite identity interact in scale-dependent fashion to determine parasite community structure.

Not available

S-EPMC10830602 | biostudies-literature

Transcription profiling time series of Bacillus anthracis growing inside murine macrophages

This experiment follows gene expression within B. anthracis while the bacteria are growing inside murine macrophages, from 1-6 hours post-infection.

ORGANISM(S): Bacillus anthracis

2007-05-11 | E-MEXP-1036 | biostudies-arrayexpress

Proteomic analysis of C2C12 myoblasts treated with Tunicamycin

Label free proteomic analysis of C2C12 myoblasts treated with either Tunicamycin (0.2ug/ml) alone or with PERK AMG44 (2uM) for 8h and followed by 16h recovery.

ORGANISM(S): Mus musculus (Mouse)

2026-04-27 | PXD059735 | Pride

Treatment of lean and diet-induced obesity (DIO) mice with a novel stable obestatin analogue alters plasma metabolite levels as detected by untargeted LC-MS metabolomics

Introduction: Obestatin is a controversial gastrointestinal peptide purported to have metabolic actions. Objectives: This study investigated whether treatment with a stable obestatin analogue (PEG-OB(Cys10, Cys13) changed plasma metabolite levels firstly in lean and subsequently in diet-induced obes...

2017-07-25 | MTBLS334 | MetaboLights

Lysine acetylation of F-actin decreases tropomyosin-based inhibition of actomyosin activity

Actin was acetylated on lysine residues with acetic anhydride to determine its impaction on the contractile properties of the thin filaments including, actin's ability to undergo crossbridge cycling with myosin, actin's affinity for tropomyosin, and the impact of actin acetylation on calcium regulat...

ORGANISM(S): Oryctolagus cuniculus (Rabbit)

2020-09-04 | PXD020732 | Pride

Lysine acetylation Myosin Actin Thin filament Tropomyosin In vitro motility

Molecular profiling of hypothalamic leucine-sensing neurons via PhosphoTRAP

To identify the molecular signature of leucine-activated neurons in the MBH, we adopted the PhosphoTRAP assay following parenchymal injection of leucine into the MBH. Neurons activated following MBH leucine injection (and expressing the neuronal activation marker cFos) co-express Ser240/244-phospho...

ORGANISM(S): Mus musculus

2026-04-01 | E-MTAB-16665 | biostudies-arrayexpress

Integrated Omic Analysis of a Guinea Pig Model of Heart Failure and Sudden Cardiac Death

Here we examine key regulatory pathways underlying the transition from compensated hypertrophy (HYP) to decompensated heart failure (HF) and sudden cardiac death (SCD) in a guinea pig model by integrated multi-ome analysis. Relative protein abundances from sham-operated, HYP and HF hearts were asses...

ORGANISM(S): Cavia porcellus (Guinea pig)

2018-10-26 | PXD003980 | Pride

Heart Proteomics Cardiac Itraq

Proteome of lysate granules using G3BP and ASPL, and changes in the G3BP interactome caused by ASPL depletion

ORGANISM(S): Homo sapiens (Human)

2025-08-16 | PXD059889 | Pride

Ribonucleoprotein granule Aspscr1 Ubxd9 Tug Protein homeostasis Viscoelasticity Aspl Stress granule Rheology Vcp/p97 G3bp Ulk Multisystem proteinopathy

Transcriptome analysis of poplar during leaf spot infection with Sphaerulina spp.

Diseases of poplar caused by the fungal pathogen Sphaerulina musiva and related species are of growing concern, particular with the increasing interest in intensive popluliculture to meet increasing energy demands. S. musiva is able to cause infection on leaves, resulting in defoliation and canker f...

ORGANISM(S): Populus balsamifera

2015-08-28 | E-GEOD-67697 | biostudies-arrayexpress

Extensive Three-Dimensional Intratumor Proteomic Heterogeneity Revealed by Multiregion Sampling in High-Grade Serous Ovarian Tumor Specimens

Enriched tumor epithelium, tumor-associated stroma, and whole tissue were collected by laser microdissection from thin sections across spatially separated levels of ten high-grade serous ovarian carcinomas (HGSOC) and analyzed by mass spectrometry. Unsupervised analyses of protein abundance data rev...