Franz-Wachtel Mirita M

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Proteomics (24)
Metabolomics (1)

Organisms

Andropogon gerardi (19)
Bacteria (19)
Canis lupus familiaris (19)
Cnidaria (19)
Ensifer adhaerens (19)
Fasciola (19)
Human alphaherpesvirus 1 strain 17 (19)
Human alphaherpesvirus 1 strain KOS (19)
Human betaherpesvirus 5 (19)
Human herpesvirus 2 strain 186 (19)
Madurella mycetomatis (19)
Mesocricetus auratus (19)
Miscanthus x giganteus (19)
Mus musculus (19)
Panicum virgatum (19)
Platyhelminthes (19)
Pseudomonas aeruginosa PA103 (19)
Rattus norvegicus (19)
Rattus rattus (19)
Rhodococcus jostii RHA1 (19)
Rhodopseudomonas palustris (19)
Saccharomyces cerevisiae (19)
Shigella (19)
Sorghastrum nutans (19)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (19)
Streptococcus pneumoniae (19)
Streptomyces coelicolor A3(2) (19)
Tripsacum dactyloides (19)
Trypanosoma vivax Y486 (19)
Homo sapiens (5)

Repository

pride (19)
PeptideAtlas (5)
MetaboLights (1)

Tissue

Others (5)
Leaf (4)
Cell culture (3)
Animal (1)
Cell suspension culture (1)
Embryonic fibroblast (1)
Embryonic kidney cell line (1)
Epithelial cell (1)
Motor neuron (1)
Mycelial cord (1)
Permanent cell line cell (1)

Disease

Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (19)
Affinity purification coupled with mass spectrometry proteomics (10)
Bottom-up proteomics (5)
Shotgun proteomics (4)
Mass spectrometry (1)
Data-dependent acquisition (1)

Instrument Platform

LTQ Orbitrap XL (3)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - alternating (1)
Flow injection analysis MS - positive (1)
Flow injection analysis MS - negative (1)

Publication Date

2022 (9)
2012 (5)
2024 (4)
2026 (3)
2025 (2)
2023 (1)
2020 (1)

UNIPROT ID/AC

A0A024R563 (5)
A0A024R8H9 (5)
A0A024RAN2 (5)
A0A024RC46 (5)
A0A087WXI0 (5)
A0A0A0MR66 (5)
A0A0A0MSA7 (5)
A0A0C4DG89 (5)
A0AVT1 (5)
A0FGR8 (5)
A0FGR8-2 (5)
A0FGR8-6 (5)
A0MZ66 (5)
A2BFH1 (5)
A3KN83 (5)
A4D110 (5)
A5A3E0 (5)
A5YKK6 (5)
A6NDG6 (5)
A6NHL2 (5)
A6NJJ0 (5)
A6NMQ1 (5)
A6NNZ2 (5)
A7E2V4 (5)
A8CG34 (5)
B1AK88 (5)
B1AKZ5 (5)
B2RPK0 (5)
B2RXF3 (5)
B3KML9 (5)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:63253 (1)
CHEBI:62194 (1)
CHEBI:71394 (1)
CHEBI:139108 (1)
CHEBI:48681 (1)
CHEBI:27537 (1)
CHEBI:28935 (1)
CHEBI:24549 (1)
CHEBI:28706 (1)
CHEBI:27648 (1)
CHEBI:28276 (1)
CHEBI:28632 (1)
CHEBI:28528 (1)
CHEBI:27668 (1)
CHEBI:28131 (1)
CHEBI:17787 (1)
CHEBI:10048 (1)
CHEBI:28599 (1)
CHEBI:15537 (1)
CHEBI:50277 (1)
CHEBI:145846 (1)
CHEBI:104362 (1)
CHEBI:104012 (1)
CHEBI:84880 (1)
CHEBI:183245 (1)
CHEBI:61958 (1)
CHEBI:48691 (1)
CHEBI:71316 (1)
CHEBI:62012 (1)
CHEBI:26900 (1)

Metabolite Name

3-oxo-5,6-dehydrosuberyl-CoA (1)
D-carnitinyl-CoA (1)
Crotonobetainyl-CoA (1)
Coprogen (1)
Adenosine thiamine triphosphate (1)
6-hydroxymethyl-dihydropterin pyrophosphate (1)
Hexadecanoyl-phosphate (n-C16:0) (1)
Ferric 2,3-dihydroxybenzoylserine (1)
Dihydromonapterin (1)
Tetradecenoate (n-C14:1) (1)
L-alanine-L-glutamate (1)
L-alanine-D-glutamate (1)
Cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (1)
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
5'-deoxyribose (1)
Octanoate (protein bound) (1)
3-Aminoacrylate (1)
Cyclic pyranopterin monophosphate (1)
Fructoselysine (1)
L-ascorbate-6-phosphate (1)
L-methionine-R-sulfoxide (1)
7-cyano-7-carbaguanine (1)
Dehydroglycine (1)
Gamma-glutamyl-gamma aminobutyric acid (1)
3-keto-L-gulonate-6-phosphate (1)
2,3-dihydroxycinnamic acid (1)
Cis-3-(3-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol (1)
3-(3-hydroxy-phenyl)propionate (1)
2-C-methyl-D-erythritol 4-phosphate (1)
Hexadecenoate (n-C16:1) (1)

Lab affiliation

Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum Germany (2)
Cell biology of neurodegenerative diseases Institute of Anatomy and Cell Biology Ulm University Ulm Germany (1)
Cellular and Molecular Microbiology Interfaculty Institute of Microbiology and Infection Medicine (IMIT) University of Tübingen Elfriede-Aulhorn-Str. 6 72076 Tübingen, Germany (1)
Eberhard-Karls-Universität Tübingen, Center of Plant Molecular Biology, Department of Plant Biochemistry, Auf der Morgenstelle 32, D-72076 Tübingen, Germany (1)
Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum (1)
Faculty of Biology and Biotechnology Ruhr-University Bochum Bochum, 44780, Germany (1)
Institute for Genetics, University of Cologne, Cologne, Germany (1)
Interfaculty Institute for Microbiology and Infection Medicine Tübingen Eberhard-Karls Universität Tübingen Auf der Morgenstelle 28 72072 Tübingen (1)
Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany Gene and RNA Therapy Center (GRTC), Faculty of Medicine, University of Tübingen, Tübingen, Germany iFIT Cluster of Excellence (EXC2180) "Image-Guided and Functionally Instructed Tumor Therapies, University of Tübingen, Tübingen, Germany (1)
Interfaculty Institute of Microbiology and Infection Medicine, Institute for Medical Microbiology and Hygiene,UKT Tübingen, 72076 Tübingen, Germany. (1)
Laboratory of Gene Technology (LoGT), Katholieke Universiteit Leuven (KU Leuven) (1)
University Hospital Bonn, Institute of Medical Microbiology, Immunology and Parasitology, Bonn, Germany (1)
University Tübingen, Center for Plant Molecular Biology, Department of Plant Biochemistry, Germany (1)
University of Stuttgart, Institute of Cell Biology and Immunology, Stuttgart, Germany (1)
University of Tuebingen - Interfaculty Institute of Biochemistry (1)
University of Tuebingen, Interfaculty Institute for Cell Biology, Proteome Center Tuebingen, Auf der Morgenstelle 15, 72076 Tübingen, Germany (1)
University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine (IMIT), Section of Cellular and Molecular Microbiology, Elfriede-Aulhorn-Str. 6, 72076 Tübingen, Germany (1)
University of Utah, School of Biological Sciences Salt Lake City, Utah, U.S.A. (1)

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Horizontal Transfer of Bacteriocin Biosynthesis Genes Requires Metabolic Adaptation To Improve Compound Production and Cellular Fitness

Biosynthetic gene clusters (BGCs) encoding the production of bacteriocins are widespread among bacterial isolates and are important genetic determinants of competitive fitness within a given habitat. Staphylococci produce a tremendous diversity of compounds, and the corresponding BGCs are frequen...

2022-11-09 | MTBLS5196 | MetaboLights

Acetylomics reveals an extensive acetylation diversity within Pseudomonas aeruginosa

This dataset provides information on acetylome changes in Pseudomonas aeruginosa PAO1 upon overexpression of an unspecified gene. These changes were measured using SILAC in combination with LC-MS/MS. However, in the paper that is supported by this dataset, we focused solely on the non-overexpressed ...

ORGANISM(S): Pseudomonas aeruginosa PAO1H2O

2024-08-13 | PXD051454 | Pride

β-actin RNA-BioID

Function and fate of mRNAs is controlled by RNA binding proteins (RBPs) but determining the proteome of a specific mRNA in vivo is still challenging. RNA proximity biotinylation on the transported β-actin mRNA tagged with MS2 aptamers (RNA-BioID) is used to characterize the dynamic proteome of the β...

ORGANISM(S): Mus musculus (Mouse)

2020-03-12 | PXD010694 | Pride

Mouse Rna localization Rbps Bioid

Proteome analysis of Staphylococcus aureus strains

Cervimycins A‒D are natural products of Streptomyces tendae HKI 0179 with promising activity against multidrug resistant staphylococci and vancomycin resistant enterococci. To initiate mode of action studies, we selected cervimycin C and D resistant (CmR) Staphylococcus aureus strains. Genome sequen...

ORGANISM(S): Bacteria Staphylococcus aureus

2022-09-22 | PXD034970 | Pride

Revertant Antibiotic treatment S. aureus Resistance Mutant Antibiotic

Regulation of the DLC3 tumor suppressor by a novel phosphoswitch

Deleted in Liver Cancer 3 (DLC3) is a Rho GTPase-activating protein (RhoGAP) that plays a crucial role in maintaining adherens junction integrity and coordinating polarized vesicle transport by modulating Rho activity at the plasma membrane and endomembranes. By employing bioinformatical sequence an...

ORGANISM(S): Homo sapiens (Human)

2024-06-04 | PXD045808 | Pride

Cytokinesis Gtpase activating protein Rho signaling Polybasic region Membrane binding

Searching for the interaction partners in yeast cytosol of newly synthesized mitochondrial signal-anchored proteins

The aim of the mass spectrometry analysis was to identify interaction partners of newly synthesized precursors of mitochondrial outer membrane proteins. To that aim, HA-tagged proteins were synthesized in vitro in extract of yeast cells and pull-down with anti-HA beads was performed.

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-08-09 | PXD031610 | Pride

Chaperones Mitochondria Signal-anchored proteins Yeast

Histone modification profile of Pristionchus pacificus

Pristionchus pacificus has emerged as a valuable model system for comparative and evolutionary-developmental biology (evo-devo) studies alongside the classic model nematode C. elegans. Previous studies have identified a lack of conservation of genetic networks underlying conserved traits, referred t...

ORGANISM(S): Pristionchus pacificus Nematoda

2024-03-14 | PXD046748 | Pride

Epigenetics P. pacificus Histone modifications Nematodes

Identification of P-body components by proximity labeling and IP-MSMS

Identification of interactors of Arabidopsis P-body components DCP1 and DCP5 in Col-0 and atg5-1 Arabidopsis thaliana plants by IP-MSMS, and in transiently transformed Nicotiana benthamiana by proximity labeling.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Nicotiana benthamiana Pseudomonas syringae pv. tomato

2026-03-17 | PXD074949 | Pride

Identification of ubquitination sites in SH3P2

Identification of ubiquitination sites in SH3P2 upon ubiquitin reaction with bacterial E3 ligase XopL

ORGANISM(S): Xanthomonas campestris pv. vesicatoria str. 85-10 Arabidopsis thaliana (Mouse-ear cress)

2022-08-12 | PXD032375 | Pride

Effector proteins Bacteria Plant

Identifying convergent pathomechanisms in ALS using hiPSC-derived motor neurons

Amyotrophic Lateral Sclerosis (ALS) is a fatal neurodegenerative disease mainly affecting upper and lower motoneurons (MNs). In the last decades, several genes have been associated to the familial form of this disorder (fALS), thus depicting an extremely complex pathogenic landscape. The aim of this...