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ProteomicsIdentification of ESAG4-interacting proteins in Trypanosoma brucei bloodstream forms
How flagellar signaling regulates the host interaction of parasites remains a challenge due to poor conservation of signaling systems with those in cilia of higher organisms. Flagellar cAMP signaling is implicated in interaction of the unicellular parasite Trypanosoma brucei with its hosts. The seco...
ORGANISM(S): Trypanosoma brucei brucei 
2022-08-31 | PXD025412 | Pride
Adenylate cyclase Cyclase-interacting protein Camp signaling Gfp trap 
ProteomicsIdentification of CARP3-interacting proteins in Trypanosoma brucei bloodstream forms and procyclic forms
How flagellar signaling regulates the host interaction of parasites remains a challenge due to poor conservation of signaling systems with those in cilia of higher organisms. The trypanosome-specific cAMP response protein 3 (CARP3) shows developmentally regulated localization at the flagellar tip me...
ORGANISM(S): Trypanosoma brucei brucei 
2022-08-31 | PXD025398 | Pride
Cyclase-interacting protein Adenylate cyclase Carp3 Camp response protein Gfp trap 
TranscriptomicsPolysome-associated mRNA profiling of cancer cells in response to CXCL12 and IGF1
CXCL12 and IGF1 are key secreting molecules produced by cancer-associated fibroblasts in breast cancer. These factors promote the survival of disseminated cancer cells in the bone marrow. To assess the combined responses elicited by CXCL12 and IGF1, we examined the translating transcriptome of cance...
ORGANISM(S): Homo sapiens 
2013-11-01 | E-GEOD-43296 | biostudies-arrayexpress
ProteomicsSam68 interactome in mouse embryonic stem cells (mESCs)
Pellets from a mESC line with GFP tagged Sam68 and a control line (mESC expressing GFP alone) were collected at different time points during differentiation (Day 0, Day 3, Day 10).Pull-down was performed from normalized total cell lysates with GFP-trap beads (Chromotek) and analyzed by mass spectrom...
ORGANISM(S): Mus musculus (Mouse) 
2026-06-08 | PXD009209 | Pride
Rna binding protein Stemm cells Lc-ms/ms 
ProteomicsTalin1-GFP pulldown in U2OS cells
In this study, we pull-down human Talin1-GFP and GFP from U2OS cells plated on fibronectin. Binding partners were then analysed using mass-spectrometry.
ORGANISM(S): Homo sapiens (Human) 
2021-05-12 | PXD024634 | Pride
Talin1 Gfp trap U2os 
ProteomicsPALB2 interactome in asynchronous human cells
Identification of interacting partners of the Partner and Localizer of BRCA2 (PALB2), essential regulator of DNA repair by homologous recombination. Interacting partners of PALB2 were purified by GFP pull down from asynchronous HEK293 Flp-In T-REx cells, exogenously expressing Flag-EGFP tagged PALB2...
ORGANISM(S): Homo sapiens (Human) 
2017-07-18 | PXD006391 | Pride
Dna repair Genomic stability 
ProteomicsTLNRD1-GFP pulldown in HEK cells
In this study, we pull-down human TLNRD1-GFP and GFP from HEK cells. Binding partners were then analysed using mass-spectrometry.
ORGANISM(S): Homo sapiens (Human) 
2024-01-27 | PXD045258 | Pride
Cell lines Gfp trap 
ProteomicsPALB2 ChAM acetylation mapping in human cells
The Chromatin Association Motif (ChAM) of the PArtner and Localizer of BRCA2 (PALB2) is essential for DNA repair function by homologous recombination in human cells. Molecular mechanisms governing ChAM interaction with chromatin remain unexplored. In this study, we have mapped acetylated lysines wit...
ORGANISM(S): Homo sapiens (Human) 
2023-03-10 | PXD014678 | Pride
Acetylation Dna repair Chromatin 
ProteomicsNorovirus infection results in assembly of virus-specific G3BP1 granules and evasion of eIF2 apha signaling
Proteomic analysis of murine stress granule and G3BP1 granulome in infected cells. BV2 GFP-G3BP1 cells were either treated with 0.1 mM arsenite for 1h to induce SG assembly or infected with MNV for 9h. G3BP1 granules were enriched by sequential centrifugation and purified by immunoprecipitation usi...
ORGANISM(S): Mus musculus (Mouse) 
2019-12-12 | PXD011956 | Pride
Stress granules G3bp1 Arsenite Mnv 
ProteomicsIP on HeLa YFP-PINK1 cells 072523
IP on HeLa YFP-PINK1 cells and submitted the bound fraction for proteomics. 16 samples total (4 conditions and 4 replicates) CTRL, CCCP, TOM40 sgRNA, and DNAJA3 sgRNA samples. The IP was done using magnetic beads (GFP-Trap Magnetic Particles M-270; chromotek) for the pull down.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2026-02-06 | MSV000100754 | MassIVE
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