Just Sarah S - OmicsDI

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Transcriptomics (12)
Genomics (6)
Metabolomics (3)
Unknown (2)
Proteomics (2)

Organisms

Homo sapiens (12)
Mus musculus (2)
Streptococcus oralis SK255 (1)
Pan troglodytes (1)
synthetic construct (1)
Vitis vinifera (1)
Glycine max (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (12)
EGA (6)
MetaboLights (3)
pride (2)

Tissue

Femur (1)
Muscle (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (2)
Shotgun proteomics (2)

Instrument Platform

DNBSEQ-G400 (1)
Direct infusion MS - (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS/MS - positive (1)

Publication Date

2013 (4)
2006 (3)
2017 (2)
2023 (2)
2025 (1)
2011 (1)
2010 (1)
2005 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:16337 (2)
CHEBI:16857 (2)
CHEBI:17191 (2)
CHEBI:17517 (2)
CHEBI:10072 (1)
CHEBI:1148 (1)
CHEBI:11750 (1)
CHEBI:11814 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:133083 (1)
CHEBI:134237 (1)
CHEBI:134490 (1)
CHEBI:136220 (1)
CHEBI:136225 (1)
CHEBI:136229 (1)
CHEBI:136234 (1)
CHEBI:136248 (1)
CHEBI:136256 (1)
CHEBI:136257 (1)
CHEBI:136479 (1)
CHEBI:1387 (1)
CHEBI:141297 (1)
CHEBI:141303 (1)
CHEBI:141304 (1)
CHEBI:141306 (1)
CHEBI:141307 (1)
CHEBI:141308 (1)
CHEBI:141309 (1)
CHEBI:141310 (1)

Metabolite Name

(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
1,3-Diaminopropane (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)
2-Amino-3-methoxybenzoic acid (1)
2-Aminoadipic acid (1)
2-Deoxy-5-cytidylic acid (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-D-ribose (1)
2-Deoxyadenosine (1)
2-Deoxyadenosine 5-triphosphate (1)
2-Deoxycytidine (1)
2-Deoxycytidine 5-diphosphate (1)
2-Deoxyguanosine (1)
2-Deoxyguanosine 5-diphosphate (1)
2-Deoxyguanosine 5-triphosphate (1)
2-Deoxyinosine (1)
2-Deoxyribose-5-phosphate (1)
2-Deoxyuridine (1)
2-Deoxyuridine 5-monophosphate (1)

Study type

Transcription profiling by array (5)
ChIP-chip by array (3)
RNA-seq of coding RNA (3)
Other (1)

Release Date

2013 (4)
2006 (3)
2017 (2)
2025 (1)
2011 (1)
2010 (1)
2005 (1)
2020 (1)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Stasbourg, France (1)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (1)

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Tissue-specific cell-free DNA degradation quantifies circulating tumor DNA burden

Profiling of circulating tumor DNA (ctDNA) may offer a non-invasive approach to monitor disease progression. Here, we developed a quantitative method, exploiting local tissue-specific cell-free DNA (cfDNA) degradation patterns, that accurately estimates ctDNA burden independent of genomic aberration...

EGAS00001004657 | EGA

HeLa cells treated with V-ATPase inhibitors or with desoxyferramine compared to HeLa in DMSO or medium with low LDL

Expression data from HeLa cells treated with V-ATPase inhibitors or with desoxyferramine compared to HeLa treated with DMSO or medium with low LDL To determine which genes respond first to low concentrations of V-ATPase inhibition, we treated HeLa cells with two different V-ATPase inhibitors, bafil...

ORGANISM(S): Homo sapiens

2010-07-22 | E-GEOD-16870 | biostudies-arrayexpress

Comparative genomic hybridization study of Streptococcus pneumoniae

PFGRC has developed a cost effective alternative to complete genome sequencing in order to study the genetic differences between closely related species and/or strains. The comparative genomics approach combines Gene Discovery (GD) and Comparative Genomic Hybridization (CGH) techniques, resulting in...

ORGANISM(S): Streptococcus oralis SK255

2011-07-31 | E-GEOD-29501 | biostudies-arrayexpress

Simultaneous Membrane and RNA Binding by Tick-Borne Encephalitis Virus Capsid Protein

Tick-borne encephalitis virus is an enveloped, pathogenic, RNA virus in the family Flaviviridae, genus Flavivirus. Viral particles are formed when the nucleocapsid, consisting of an RNA genome and multiple copies of the capsid protein, buds through the endoplasmic reticulum membrane and acquires ...

2023-01-06 | MTBLS6076 | MetaboLights

Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

To understand gene expression networks leading to functional properties and compositional traits of the soybean seed, we have undertaken a detailed examination of soybean seed development from a few days post-fertilization to the mature seed using Illumina high-throughput transcriptome sequencing (R...

ORGANISM(S): Glycine max

2013-03-18 | E-GEOD-42871 | biostudies-arrayexpress

RNA-seq analysis of grafting and wounding grapevine stems

Grafting plants uses intrinsic healing processes to join two different plants together to create one functional organism. To further our understanding of the molecular changes occurring during graft union formation in grapevine, we characterized the transcriptome of intact and wounded cuttings (with...

ORGANISM(S): Vitis vinifera

2025-05-01 | E-MTAB-14101 | biostudies-arrayexpress

Mouse muscle LC-MSMS upon weightlessness

Upon weightlessness and microgravity, deleterious effects on the neurosensory and neurovestibular systems, haematological changes, and deconditioning of musculoskeletal, cardiovascular and cardiopulmonary functions have been reported. In particular, loss of muscle mass and strength are triggered by ...

ORGANISM(S): Mus musculus (Mouse)

2017-06-14 | PXD005035 | Pride

Silencing of odorant receptor gene expression by G protein M-NM-2M-NM-3 signaling ensures the expression of one odorant receptor per olfactory sensory neuron

Olfactory sensory neurons express just one out of a possible ~1000 odorant receptor genes, reflecting an exquisite mode of gene regulation. In one model, once an odorant receptor is chosen for expression, other receptor genes are suppressed by a negative feedback mechanism, ensuring a stable functio...

ORGANISM(S): Danio rerio

2013-12-16 | E-GEOD-53334 | biostudies-arrayexpress

Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Mouse femur LC-MSMS upon weightlessness

Bone loss and immune dysregulation are among the main adverse outcomes of spaceflight challenging astronaut’s health and safety. However, consequences on B cell development and responses are still under-investigated. Up to now, most studies addressing these questions were performed using an amphibia...