Lc_ms/ms - OmicsDI

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Proteomics (18)
Metabolomics (3)
Unknown (1)

Organisms

Andropogon gerardi (16)
Bacteria (16)
Canis lupus familiaris (16)
Clostridium perfringens (16)
Cnidaria (16)
Cricetulus griseus (16)
Eukaryota (16)
Fasciola (16)
Hepatitis B virus (16)
Human betaherpesvirus 5 (16)
Japanese encephalitis virus group (16)
Madurella mycetomatis (16)
Mesocricetus auratus (16)
Miscanthus x giganteus (16)
Mycobacterium tuberculosis (16)
Orthoflavivirus (16)
Panicum virgatum (16)
Platyhelminthes (16)
Pseudomonas aeruginosa AES-1R (16)
Rickettsia (16)
Saccharomyces cerevisiae (16)
Schizosaccharomyces pombe (16)
Severe acute respiratory syndrome coronavirus 2 (16)
Shigella (16)
Sorghastrum nutans (16)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (16)
Streptococcus pneumoniae (16)
Streptomyces coelicolor A3(2) (16)
Toxoplasma gondii (16)
Tripsacum dactyloides (16)

Repository

pride (16)
GNPS (2)
MassIVE (2)
MetaboLights (1)

Tissue

Cell culture (8)
Blood plasma (2)
Epithelial cell (2)
HEK-293T cell (2)
Embryonic fibroblast (1)
Flp-In-T-REx cell (1)
HeLa cell (1)
LN-229 cell (1)
Liver (1)
Lung (1)
Photosynthetic cell (1)
Respiratory epithelial cell (1)

Disease

Disease free (2)
Pulmonary hypertension (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (16)
Bottom-up proteomics (7)
Shotgun proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (3)
Data-independent acquisition (2)
Mass spectrometry assay (1)
DiaPASEF (1)
Proteogenomics (1)

Instrument Platform

LTQ Orbitrap Elite (2)
Xevo G2 Q-Tof (2)
Liquid Chromatography MS - negative (1)

Publication Date

2026 (6)
2019 (4)
2025 (3)
2018 (2)
2024 (2)
2017 (2)
2016 (1)
2015 (1)

CHEBI ID

CHEBI:75092 (1)
CHEBI:17846 (1)
CHEBI:28499 (1)
CHEBI:17948 (1)
CHEBI:15401 (1)
CHEBI:16243 (1)

Metabolite Name

Morin (1)
Dihydroquercetin (1)
Dihydrokaempferol (1)
Naringenin (1)
Kaempferol (1)
Quercetin (1)

Release Date

2012 (1)

Lab affiliation

Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK (3)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
Associate Professor, Department of Biochemistry & Molecular Biology, UTMB Mass Spectrometry Director, University of Texas Medical Branch – Galveston, Texas, USA (1)
CRUK & MRC Oxford Institute for Radiation Oncology, University of Oxford, Department of Oncology, Old Road Campus Research Building, Oxford, OX37DQ, UK (1)
CRUK and MRC Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Roosevelt Drive, Oxford, OX3 7DQ, UK (1)
Department of Oncology, University of Oxford, OX3 7DQ, UK (1)
Department of Oncology, University of Oxford, Oxford, Oxfordshire, OX3 7DQ, UK (1)
HIT Center for Life Sciences,Harbin Institute of Technology,China (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Pediatric Critical Care Medicine; Developmental Lung Biology and CVP Research Laboratories, School of Medicine, University of Colorado (Aurora, CO, USA). (1)
Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Target Discovery Institute, University of Oxford, UK (1)
The MRC Weatherall Institute for Molecular Medicine, Department of Oncology, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK (1)
Umea University, Department of Chemistry, 90187 Umea, Sweden (1)

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Modulation of proteostasis counteracts oxidative stress and affects DNA base excision repair capacity in ATM-deficient cells

Ataxia telangiectasia (A-T) is a syndrome associated with loss of ATM protein function. Neurodegeneration and cancer predisposition, both hallmarks of A-T, are likely to emerge as a consequence of the persistent oxidative stress and DNA damage observed in this disease. Surprisingly however, despite ...

ORGANISM(S): Homo sapiens (Human)

2017-09-04 | PXD006648 | Pride

Characterization of Carotenoid-protein Complexes and Gene Expression Analysis Associated with Carotenoid Sequestration in Pigmented Cassava (Manihot Esculenta Crantz) Storage Root.

Not available

S-EPMC3514709 | biostudies-literature

MassIVE Dataset Submission - Alnus species

LC-MS/MS data used in a work titled "Assessing Specialized Metabolite Diversity of Alnus species by Digitized LC_MS/MS Data Analysis Workflow". Negative ion mode DDA data from 15 extracts of 4 Alnus species (barks, twigs, leaves, and fruits)

ORGANISM(S): Alnus Hirsuta Var. Sibirica (ncbitaxon:253220) Alnus Firma (ncbitaxon:109059) Alnus Japonica (ncbitaxon:109063) Alnus Hirsuta (ncbitaxon:109061)

2019-08-12 | MSV000084202 | MassIVE

LC_MS Dataset for Morin Detection in Phoebe Wood Extracts, Enzyme Assays and Transgenic Populus

This dataset contains LC-MS data generated for the detection of morin in plant tissues and enzymatic reactions related to flavonoid biosynthesis. The samples include methanol extracts of wood tissues from Phoebe species (including Phoebe zhennan and related Lauraceae species), in vitro enzyme rea...

2026-03-26 | MTBLS14137 | MetaboLights

8-Oxoguanine DNA glycosylase 1 conceals guanine oxidation in nucleoprotein-associated RNA of respiratory syncytial virus

Respiratory syncytial virus (RSV), along with other prominent respiratory RNA viruses such as influenza and SARS-CoV-2, significantly contributes to the global incidence of respiratory tract infections. These pathogens induce the production of reactive oxygen species (ROS), which play a crucial role...

ORGANISM(S): Homo sapiens (Human) Human respiratory syncytial virus A

2024-10-09 | PXD053262 | Pride

Oxidative stress Ogg1 8-oxoguanine Rna oxidation

GNPS - MassIVE Dataset Submission - Alnus species

ORGANISM(S): Alnus Hirsuta Var. Sibirica (ncbitaxon:253220) Alnus Firma (ncbitaxon:109059) Alnus Japonica (ncbitaxon:109063) Alnus Hirsuta (ncbitaxon:109061)

2019-08-12 | MSV000084202 | GNPS

The impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics

Hybrid quadrupole time-of-flight (QTOF) is one of the two major mass spectrometric technologies used in proteomics. Although based on simple fundamental principles, it has over the last decades greatly evolved in terms of achievable resolution, mass accuracy and dynamic range. The Bruker impact plat...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast)

2015-05-26 | PXD001592 | Pride

Qtof Proteomics Lc_ms/ms

SPARTAN Protease and Checkpoint Kinase 1 Cross-Activation Loop Safeguards Genome Stability

DNA-protein crosslinks (DPCs) are abundant DNA lesions, which constantly challenge genome stability by interfering with DNA replication. SPARTAN (SPRTN) protease plays a central role in DPCs repair in proliferative vertebrate cells. SPRTN is a constitutive part of the DNA replication machinery and i...

ORGANISM(S): Homo sapiens (Human)

2019-11-08 | PXD006741 | Pride

Cancer Spartan protease Dna-protein crosslinks Ageing Genome stability Chk1 kinase Dna replication

Qualea grandiflora - descriptive

This report is about the dataset of proteome from Qualea grandiflora plants supplemented and not supplemented with aluminium (Al) by label free mass spectrometry (LC_MS/MS). The presence of Al+3 in acid soils impairs the growth and development of most crop plant. However, there are many native Brazi...

ORGANISM(S): Qualea Grandiflora (ncbitaxon:178107)

2018-04-18 | MSV000082284 | MassIVE

Plasma proteomics of patients with pulmonary arterial hypertension

Pulmonary arterial hypertension (PAH) involves progressive remodeling of the pulmonary vasculature and right ventricle, yet much of our understanding of disease progression relies on rodent studies because opportunities for investigation in humans are limited. We integrated plasma proteomic, metabol...

ORGANISM(S): Homo sapiens (Human)

2026-09-29 | PXD083317 | Pride

Proteomics Pulmonary hypertension Clinical proteomics Lc_ms/ms

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