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ProteomicsProteomic analysis of T-lymphocytes, WT and after TTN gene silencing
LTQ folder: It cointains 16 folders (8 CTRL and 8 siRNA TTN; 4 biological replicates x 2 technical replicates per condition) Q EXA folder: It cointains 16 folders (8 CTRL and 8 siRNA TTN; 4 biological replicates x 2 technical replicates per condition) LCQ DECA XP folder: It cointains 2 folders...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-04-29 | MSV000087338 | MassIVE
ProteomicsImpacts of 2-amino-4,6-dinitrotoluene (2-ADNT) Exposure in Northern Bobwhite
Effects of 2A-DNT on global protein expression were investigated in liver tissue for both sexes and kidney in males, all at a 30 mg/kg-d dose using nLC-MS/MS.
ORGANISM(S): Colinus virginianus (Northern bobwhite) (Tetrao virginianus) 
2016-07-06 | PXD001206 | Pride
Colinus virginianus Quail Lcq deca xp plus 
ProteomicsTwo Eutrema salsugineum ecotypes ESI-MS/MS
Salt cress (Eutrema salsugineum, synonymously Thellungiella salsuginea) is an extremophile, a close relative of Arabidopsis. In order to understand the selective mechanisms that shape their complex traits underlying natural variation, we analyzed the physiological and proteomic differences between S...
ORGANISM(S): Eutrema salsugineum 
2022-08-11 | PXD018751 | Pride
Eutrema salsugineum Ecotype Esi-ms/ms 
ProteomicsExtra-cellular proteins from Lactic Acid Bacteria
This data displays both known and unknown extra-cellular proteins from 13 species of Lactic Acid bacteria found in the honey-crop of the honeybee Apis. mellifera mellifera. The tryptic peptides from the secreted proteins were run on an Agilent HPLC on a C18 reverse phase column (75 µm x 150 mm, part...
ORGANISM(S): Firmicutes (gram-positive bacteria) 
2013-10-01 | PXD000187 | Pride
Proteins Lactobacillus Bifidobacterium Mass spec 
ProteomicsMudPIT analyses of proteins associated with Piccolo and Bassoon in the presynaptic active zone
We used a 3-step protocol that separates lipid-associated proteins based on their buoyant density, size and charge. All steps were conducted either on ice or at 4C. Step 1 involved a sucrose density gradient centrifugation in which ca. 100 postnatal day 4 rat brains were homogenized in buffer A (5...
ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116) 
2016-07-11 | MSV000079897 | MassIVE
ProteomicsProtein solution method for direct identification of Arabidopsis stem proteins
Identifying the intracellular and cell wall-ionically bound glycoside hydrolases (GHs) carbohydrate esterases (CEs) at the late growth stage of Arabidopsis stems is important for understanding the mechanisms regulating the cell wall integrity. The fact that whole plant stems are used as biomass fee...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-05-11 | PXD001851 | Pride
Plant late growth stage Pectin-modifying enzyme Feedstock engineering Plant senescence Biomass recalcitrance Glycoside hydrolase Xylan-modifying enzyme Cell wall proteins 
ProteomicsProtein gel band method for improving the identification of stem proteins
Identifying the intracellular and cell wall-ionically bound glycoside hydrolases (GHs) carbohydrate esterases (CEs) at the late growth stage of Arabidopsis stems is important for understanding the mechanisms regulating the cell wall integrity. The fact that whole plant stems are used as biomass fee...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-05-11 | PXD001852 | Pride
Plant late growth stage Pectin-modifying enzyme Feedstock engineering Plant senescence Biomass recalcitrance Glycoside hydrolase Xylan-modifying enzyme Cell wall proteins 
ProteomicsGlobal liver proteomics of rats exposed for five days to phenobarbital identifies changes associated with cancer and with cyp metabolism
Adult male Sprague Dawley-derived rats were housed and fed as described previously (Dail et al., 2007). Three rats were treated i.p. with PB in saline at 80 mg/kg body weight/day (treated) for 5 days as described previously (Ma and Chambers; 1995). Following sacrifice on day 5, the livers were rem...
ORGANISM(S): Rattus norvegicus (Rat) 
2008-12-09 | PRD000797 | Pride
ProteomicsGenomics and proteomics of biofuel
Bacteria was grown at 30C in 3 different conditions, i.e. SYN (syngas and minimal medium- ATCC no 1789), AC (0.3% acetate in minimal medium- ATCC no 1789) and TSB (tryptic soy broth). After harvesting by centrifugation, O. carboxidovorans pellets (1g) were lysed in 100 mM Tris-Cl pH 8.0, 2% Triton X...
ORGANISM(S): Oligotropha carboxidovorans (Pseudomonas carboxydovorans) 
2012-05-23 | PRD000150 | Pride
ProteomicsProteomic analysis of the fish pathogen Flavobacterium columnare
Clinical Flavobacterium columnare ATCC 49512 was grown on Flavobacterium columnare growth medium (FCGM). Bacteria from four colonies at mid-exponential phase were harvested, total proteins were isolated, and identified using 2-DE MALDI TOF/TOF MS and 2-D LC ESI MS/MS analyses. The MS/MS spectra for ...
ORGANISM(S): Flavobacterium columnare 
2016-03-11 | PRD000810 | Pride
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