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TranscriptomicsIdentification of the mRNAs interacting with the Nup59 nucleoporin using RNA-IP and microarrays in budding yeast
To specifically explore such mRNA localization events, we immunopurified the entire Nuclear Pore Complex scaffold using Nup59 as a bait and systematically analyzed all co-isolating mRNAs using Agilent microarrays in the budding yeast Saccharomyces cerevisiae. A mock IP was performed as a control exp...
ORGANISM(S): Saccharomyces cerevisiae 
2021-03-31 | E-MTAB-9521 | biostudies-arrayexpress
TranscriptomicsChiP-chip profiling of Drosophila melanogaster cell lines to identify targets for nuclear pore proteins Nup153 and Megator.
ChIP-chip experiment for nuclear pore proteins Nup153 and Mtor in Drosophila S2 and Kc cells. This experiment is related to E-MEXP-2523.
ORGANISM(S): Drosophila melanogaster 
2010-02-12 | E-MEXP-2525 | biostudies-arrayexpress
ProteomicsDocking a flexible basket onto the core of the nuclear pore complex
The nuclear basket attaches to the nucleoplasmic side of the nuclear pore complex (NPC), coupling transcription to mRNA quality control and export. The basket expands the functional repertoire of a subset of NPCs in S. cerevisiae by drawing a unique RNA/protein interactome. Yet, how the basket docks...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2024-07-11 | PXD052015 | Pride
Nup153 Nuclear pore complex Mlp2 Nuclear basket Mlp1 Membrane-based reconstitution Y-complex Alphafold screen. Nuclear envelope Slim Nucleocytoplasmic transport Npc assembly Tpr Nup85 Nup60 
GenomicsGenome-wide maps of Nup98 binding in human embryonic stem cells, neural progenitors, neuron cells and lung fibroblasts
Recent evidence suggests that nucleoporins, well known components that control nucleo-cytoplasmic trafficking, have wide-ranging functions in developmental gene regulation that potentially extend beyond their role in nuclear transport. Whether the unexpected role of nuclear pore proteins in transcri...
ORGANISM(S): Homo sapiens 
2013-07-17 | E-GEOD-48996 | biostudies-arrayexpress
TranscriptomicsEffect of NPAP1/C15orf2 overexpression on transcriptome of HEK293 cells
To gain insight into the function of Nuclear pore associated protein 1 (NPAP1, formerly C15orf2), we overexpressed NPAP1 in HEK293 cells. We detected no significant difference between NPAP1-expression of induced and uninduced cells in three technical replicates, exept for an approximately 10-fold in...
ORGANISM(S): Homo sapiens 
2012-06-17 | E-GEOD-36575 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation to identify gene-nuclear pore association in wild type and THO mutants of yeast
This work aimed at analysing the genomic loci that are aberrantly docked to the nucleopore in mutants of the THO complex
ORGANISM(S): Saccharomyces cerevisiae 
2008-08-15 | E-TABM-535 | biostudies-arrayexpress
GenomicsMitochondria Directly Interact with the Nuclear Pore Complex
Mitochondria Directly Interact with the Nuclear Pore Complex
PRJNA1439387 | ENA
GenomicsChannel Nuclear Pore Complex subunits are required for transposon silencing in Drosophila
Channel Nuclear Pore Complex subunits are required for transposon silencing in Drosophila
PRJNA638919 | ENA
ProteomicsPNET1 is an on-demand component of the nuclear pore complex gating cell proliferation rates
The nuclear pore complex (NPC) is a cornerstone of eukaryotic cell functionality, orchestrating the nucleocytoplasmic shuttling of macromolecules. Here, we report that PNET1, a transmembrane nucleoporin conserved between humans and plants, is a dynamic, adaptable NPC component, exclusively expressed...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-03-10 | PXD054475 | Pride
Arabidopsis thaliana Callus Nuclear pore complex 
ProteomicsTurboID identification of evolutionarily divergent components of the nuclear pore complex in the malaria model Plasmodium berghei
Twenty years since publication of the Plasmodium falciparum and P. berghei genomes one-third of their protein-coding genes lack functional annotation. In the absence of sequence and structural homology, protein-protein interactions can facilitate functional prediction of such orphan genes by mapping...
ORGANISM(S): Plasmodium 
2022-08-21 | PXD034491 | Pride
Plasmodium Malaria Turboid Nup Bioid Proximity-labeling Nucleoporins Nuclear pore complex 
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