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Proteomicsmsqrob2PTM: differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level
In the era of open-modification search engines, more post-translational modifications than ever can be detected by LC-MS/MS-based proteomics. This development can switch proteomics research into a higher gear, as PTMs are key in many cellular pathways important in cell proliferation, migration, meta...
ORGANISM(S): Homo sapiens (Human) 
2024-06-16 | PXD043476 | Pride
Msqrob2ptm Ptm Msqrob Peptidoform 
Unknownmsqrob2PTM: Differential Abundance and Differential Usage Analysis of MS-Based Proteomics Data at the Posttranslational Modification and Peptidoform Level.
Not available
S-EPMC10875266 | biostudies-literature
TranscriptomicsMolecular analysis of precursor lesions in familial pancreatic cancer
Background: With less than a 5% survival rate pancreatic adenocarcinoma (PDAC) is almost uniformly lethal. In order to make a significant impact on survival of patients with this malignancy, it is necessary to diagnose the disease early, when curative surgery is still possible. Detailed knowledge of...
ORGANISM(S): Homo sapiens 
2013-03-27 | E-GEOD-43288 | biostudies-arrayexpress
UnknownA Universal Spectrum Annotator for Complex Peptidoforms in Mass Spectrometry-Based Proteomics.
Not available
S-EPMC12573231 | biostudies-literature
TranscriptomicsTissue-specific differentiation of a circulating CCR9- pDC-like common dendritic cell precursor
Committed precursors of conventional dendritic cells (pre-cDCs) derived from the common DC progenitor which differentiate into cDC subpopulations in peripheral tissues have been identified, but committed precursors for plasmacytoid DCs (pDCs) have not been found. Here we show that CDP-derived ‘CCR9-...
ORGANISM(S): Mus musculus 
2012-05-15 | E-GEOD-37996 | biostudies-arrayexpress
TranscriptomicsEffective transplantation of photoreceptor precursor cells selected via cell surface antigen expression.
Microarray analysis of postnatal NrlGFP-expressing rod photoreceptor precursors. NrlGFP positive versus NrlGFP negative at postnatal day 4
ORGANISM(S): Mus musculus 
2013-06-07 | E-MEXP-3922 | biostudies-arrayexpress
TranscriptomicsGene expression analysis of primary human myeloid precursor cells treated with O6-benzylguanine (6BG) and Temozolomide (TMZ)
For the comparison of 6BG/TMZ with control sample, the predominant annotation among the upregulated genes is M-bM-^@M-^XapoptosisM-bM-^@M-^Y. The majority of the downregulated genes is assigned to heat shock proteins and proteins which bind unfolded proteins. To look at early changes in gene express...
ORGANISM(S): Homo sapiens 
2013-06-03 | E-GEOD-44122 | biostudies-arrayexpress
UnknownAssessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets.
Not available
S-EPMC10243108 | biostudies-literature
UnknownThe Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity.
Not available
S-EPMC4999073 | biostudies-literature
TranscriptomicsFLASH-seq analysis of adipocyte precursor subpopulations (P1 and P2) isolated from a high-fat diet (HFD) mouse, comparing two sorting strategies: conventional manual gating and ConvexGating
This experiment evaluates whether the gates predicted by the tool ConvexGating improve the isolation of adipocyte precursor subpopulations (P1 and P2) from one high-fat diet (HFD) mouse relative to conventional manual gating. Visceral white adipose tissue (WAT) was chosen as a challenging test case ...
ORGANISM(S): Mus musculus 
2026-07-17 | E-MTAB-17301 | biostudies-arrayexpress
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