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ProteomicsRNA pulldown-MS, Dlg4 RNA in mouse brain
Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding ...
ORGANISM(S): Mus musculus (Mouse) 
2022-10-13 | PXD034159 | Pride
Pulldown M6a Rna Lc-ms/ms 
ProteomicsLncRNA CDIPTOSP RNA pulldown-LC-MS/MS
To identify proteins that interact with CDIPTOSP in human ovarian cancer SKOV3 cells, RNA pulldown experiments were performed and subjected to three independently LC-MS/MS analysis and Label-free quantification.
ORGANISM(S): Homo sapiens (Human) 
2026-06-29 | PXD051822 | Pride
Lncrna Rna pulldown Cdiptosp Lc-ms/ms 
ProteomicsRNA pulldown-MS, Dlg4 RNA in mHippoE-2 cells
Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding ...
ORGANISM(S): Mus musculus (Mouse) 
2022-10-13 | PXD034161 | Pride
Pulldown M6a Rna Lc-ms/ms 
ProteomicsLFQ-MS analysis of nucleosome pulldown experiments with symmetric and asymmetric nucleosomes
Recombinant mononucleosomes were generated carrying H3K4me3 and H3K27me3 in symmetric or asymmetric monovalent or asymmetric bivalent conformation, immobilized on beads and subjected to pulldown assays with mouse ESC nuclear extract. Binding was analyzed by quantitative LFQ-MS.
ORGANISM(S): Mus musculus (Mouse) 
2025-01-02 | PXD015990 | Pride
Chromatin Transcription Histone acetylation Embryonic stem cells Differentiation Bivalent domains Histone methylation 
ProteomicsMMV2224 project pulldown experimental data
Chemical pulldown - sample processing, fractionation, protein identification and quantitation All aspects of sample processing, TMT labelling, fractionation by HPLC and LC–MS/MS, and protein identification and quantitation were described previously (Milne, R., et al., Toolkit of Approaches To Suppo...
ORGANISM(S): Plasmodium falciparum (isolate 3D7) 
2026-09-07 | PXD075229 | Pride
Pulldown Kinase inhibitors Plasmodium falciparum 
ProteomicsRNA antisense oligonucleotide pulldown coupled with mass spectrometry (MS) to identify C1QTNF1-AS1 protein interactors
We used C1QTNF1-AS1 antisense oligonucleotide pulldown coupled with MS to identify protein interactors of lncRNA C1QTNF1-AS1 in human HCT116 cells. Five antisense oligonucleotides against C1QTNF1-AS1 and luciferase (negative control) were used for the pulldown. Three independent oligonucleotides (C...
ORGANISM(S): Homo sapiens (Human) 
2026-03-12 | PXD059546 | Pride
Antisense oligo pulldown  rna interactome  lc-ms/ms  label-free quantification 
ProteomicsLinc-ADAIN Pulldown assay in Human Adipocytes.
Description: a biotinylated pulldown assay of linc-ADAIN, lincRNA vs Antisense Linc-ADAIN in primary human ASC adipocytes coupled to mass spectrometry (MS).
ORGANISM(S): Homo sapiens (Human) 
2024-10-17 | PXD051388 | Pride
Pulldown assay Linc-rna protein interaction Adipocytes Lincrna Linc-adain 
ProteomicsBLM-G4 pulldown IP-MS in human colon cancer HT-29 cells
the experiment uses biotin-labelled BLM-G4 to incubate with HT-29 cell lysates, and uses streptavidin agarose beads to pulldown BLM-G4-binding proteins. Utilize LC-MS/MS to annotate and quantify the proteins pulled down by BLM-G4.
ORGANISM(S): Homo sapiens (Human) 
2026-06-08 | PXD075345 | Pride
Pulldown Blm-g4 Ip-ms Ht-29 cell 
ProteomicsE12.5 diencephalon tissues LC-MS of wild-type mice after RNA pulldown with Crnde sense and anti-sense mRNA probes.
In order to explore the lncRNA Crnde interacting proteins in mouse diencephalon tissues, we first designed and synthesized Crnde sense and anti-sense mRNA probes, and collected the diencephalon tissues of embryonic mice for RNA pulldown experiment, and identified the enriched products by mass spectr...
ORGANISM(S): Mus musculus (Mouse) 
2026-02-14 | PXD056797 | Pride
Diencephalon lc-ms rna pulldown crnde 
ProteomicsPulldown GST-SH3 domains of Endophilin and rat brain lysates
Pulldown experiments using GST-SH3 domains from hman Endophilin A1, A2 and A3 and rat brain lysates
ORGANISM(S): Rattus norvegicus (Rat) 
2018-08-06 | PXD010090 | Pride
Pulldown Endophilin Rat brain lysates 
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