R-methylation - OmicsDI

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Transcriptomics (1746)
Unknown (1615)
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Proteomics (196)
Methylation profiling (91)
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Organisms

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Homo sapiens (209)
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Aquipseudomonas alcaligenes (1)
Helicobacter pylori 26695 (1)

Repository

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Pseudomonas aeruginosa rsmA mutant infected (1)
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Technology Type

Mass Spectrometry (147)
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Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
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Instrument Platform

NextSeq 500 (15)
Illumina HiSeq 2000 (13)
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Publication Date

2015 (314)
2013 (270)
2014 (261)
2010 (221)
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UNIPROT ID/AC

Q9NPP6 (4)
Q96K68 (4)
Q96DK0 (4)
Q8WY24 (4)
Q8NCL6 (4)
Q7Z379 (4)
Q7Z374 (4)
Q6ZW64 (4)
Q6ZVX0 (4)
Q6P089 (4)
Q6N092 (4)
Q6N091 (4)
Q6N090 (4)
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P22792 (4)
Q5UGI6 (4)
P02753 (4)
P08603 (4)
P06309 (4)
P04220 (4)
P04217 (4)
P04196 (4)
P02790 (4)
P02774 (4)
P02652 (4)
P02144 (4)

ENSEMBL ID

ENSG00000229353 (3)
ENSG00000170477 (1)

CHEBI ID

CHEBI:17256 (4)
CHEBI:17822 (4)
CHEBI:18237 (4)
CHEBI:22660 (4)
CHEBI:22653 (4)
CHEBI:27570 (4)
CHEBI:26986 (4)
CHEBI:16811 (4)
CHEBI:28300 (4)
CHEBI:15428 (4)
CHEBI:17268 (4)
CHEBI:27266 (4)
CHEBI:15891 (4)
CHEBI:16449 (4)
CHEBI:18012 (4)
CHEBI:78320 (4)
CHEBI:16919 (4)
CHEBI:15354 (4)
CHEBI:28997 (3)
CHEBI:17768 (3)
CHEBI:70958 (3)
CHEBI:17713 (3)
CHEBI:17172 (3)
CHEBI:16113 (3)
CHEBI:33508 (3)
CHEBI:16450 (3)
CHEBI:15927 (3)
CHEBI:15721 (3)
CHEBI:15611 (3)
CHEBI:26271 (3)

Metabolite Name

Pantothenate (3)
Isocitrate (3)
Glycerate (3)
Dimethylglycine (3)
Cholesterol (3)
Xanthosine (3)
Uridine (3)
Tryptophan (3)
Thymine (3)
Thymidine (3)
Taurine (3)
Serine (3)
Sarcosine (3)
Proline (3)
Orotate (3)
Nicotinamide (3)
Malate (3)
Lysine (3)
Inosine (3)
Hypoxanthine (3)
Glutamate (3)
Fumarate (3)
Dihydroorotate (3)
Cytidine (3)
Cystathionine (3)
Citrulline (3)
Carnitine (3)
Betaine (3)
Aspartate (3)
Asparagine (3)

First Public Date

2014 (49)
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2024 (37)
2026 (34)
2021 (31)
2022 (30)
2020 (29)
2019 (26)
2017 (22)
2016 (14)
2015 (12)
2018 (10)
2013 (9)

Classification

bacteria (6)
fungi (2)
protozoa (2)

Modification

N6 (18)
N6-dimethyl-L-lysine (11)

Study type

Transcription profiling by array (882)
Methylation profiling by array (314)
RNA-seq of coding RNA (193)
Methylation profiling by high throughput sequencing (159)
Unknown experiment type (52)
RNA-seq of non coding RNA (47)
ChIP-seq (45)
Comparative genomic hybridization by array (38)
ChIP-chip by tiling array (28)
Other (24)
Transcription profiling by tiling array (12)
Bisulfite-seq (12)
Proteomic profiling by array (11)
Transcription profiling by SAGE (10)
ChIP-chip by array (9)
Transcription profiling by RT-PCR (9)
Genotyping by array (6)
DNA-seq (5)
Animal - High-throughput sequencing (4)
Cell line - Methylation microarray (3)
Human - Methylation microarray (3)
High-throughput sequencing (3)
RIP-seq (3)
CUT&RUN (3)
RNAi profiling by array (2)
Genotyping by high throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
PRO-seq (1)
RNA-seq of non coding RNA from single cells (1)
Human - Two-color microarray (1)

Release Date

2015 (369)
2014 (313)
2013 (292)
2022 (256)
2010 (242)
2012 (239)
2011 (217)
2023 (197)
2021 (196)
2016 (190)
2020 (158)
2025 (155)
2024 (138)
2018 (109)
2019 (101)
2009 (82)
2017 (76)
2008 (72)
2007 (37)
2026 (29)
2005 (11)
2004 (11)
2006 (7)
2002 (3)
2003 (3)
2001 (3)

Lab affiliation

wuhan union hospital (3)
Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Brno, Czech Republic (3)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (3)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (3)
Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark (2)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (2)
Centre of New Technology University of Warsaw Banacha 2C 02-097 Warsaw, Poland (2)
Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, China, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University (2)
Masaryk University (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
European Institute of Oncology, Milan, Italy (2)
School of Biotechnology and Biomolecular Sciences, Systems Biology Initiative, UNSW, Australia (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)
Department of Medical Biology, Medical University of Bialystok, Poland (1)
Cell Signalling and Proteomics Group, Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Department for Biology, Institute for Zoology, University of Cologne (1)
Department of Hepatology, Proteomics laboratory. CIMA, University of Navarra. 31008 Pamplona, Spain. (1)
Intravacc, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands (1)
CEITEC Masaryk University (1)
European Institute of Oncology IRCSS, Department of Experimental Oncology, Milan, Italy (1)
Centre for Bioinformatics and Computational Biology, University of Stellenbosch, South Africa (1)
CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Optys Tech Corporation (1)
Université Catholique de Louvain (UCLouvain) and Institute of Neuroscience (IONS), 1200 Brussels, Belgium Cliniques universitaires Saint-Luc, Neurology Department, 1200 Brussels, Belgium Harvard Medical School, Massachusetts General Hospital, Department of Radiology, Gordon Center for Medical Imaging, Boston, MA, USA. (1)
Assistant Professor, Biochemistry Boston University School of Medicine Investigator, National Emerging Infectious Diseases Laboratories (NEIDL), USA (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
Mendel Center for Plant Genomics and Proteomics, Central European Institute of Technology, Brno, Czech Republic (1)
Department of Integrative and Structural Computational Biology, The Scripps Research Institute, La Jolla, CA (1)
Max Planck Institute of Immunobiology and Epigenetics Freiburg, Germany (1)

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Systematic analysis of the impact of R-methylation on RBPs-RNA interactions

RNA binding proteins (RBPs) bind RNAs through specific RNA-binding domains, generating multi-molecular complexes known as ribonucleoproteins (RNPs). Various post-translational modifications (PTMs) have been described to regulate RBP structure, subcellular localization and interactions with other pro...

ORGANISM(S): Homo sapiens (Human)

2021-08-25 | PXD024601 | Pride

Methyltioadenosine regulates liver cells proteome and methylproteome. Implications in liver biology and disease.

Methylthioadenosine phosphorylase (MTAP), a key enzyme in the adenine and methionine salvage pathways, catalyzes the hydrolysis of methylthioadenosine (MTA), a compound suggested to affect pivotal cellular processes in part through the regulation of protein methylation. MTAP is expressed in a wide r...

ORGANISM(S): Homo sapiens (Human)

2016-02-01 | PXD002957 | Pride

Human Methylation Mta Liver Msms

ProMetheus: a database of hmSILAC-validated protein methylation sites

Protein arginine (R) methylation is a post-translational modification that has been shown to play a role in various biological processes, such as RNA splicing, DNA repair, immune response, signal transduction and tumor development. Here, we present a dataset of high-quality methylations obtained fro...

ORGANISM(S): Homo sapiens (Human)

2022-06-02 | PXD027949 | Pride

Heavy methyl silac Silac Methylation

TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution.

Not available

S-EPMC7797050 | biostudies-literature

SETDB1 Triple Tudor Domain Ligand, (R,R)-59, Promotes Methylation of Akt1 in Cells.

Not available

S-EPMC10718286 | biostudies-literature

OpTiles: an R package for adaptive tiling and methylation variability profiling.

Not available

S-EPMC12646143 | biostudies-literature