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ProteomicstRF-24 RNA pulldown in KYSE150 and KYSE30
To delineate the oncogenic mechanism of tRF-24 in ESCC, we performed RNA pull-down assays with biotinylated tRF-24 and antisense control, followed by mass spectrometry (MS) analysis.
ORGANISM(S): Homo sapiens (Human) 
2025-12-01 | PXD063163 | Pride
Human Kyse30 Esophagus Rna-pulldown Kyse150 
ProteomicsRNA pulldown-MS, Dlg4 RNA in mouse brain
Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding ...
ORGANISM(S): Mus musculus (Mouse) 
2022-10-13 | PXD034159 | Pride
Pulldown M6a Rna Lc-ms/ms 
ProteomicsRNA pulldown-MS, Dlg4 RNA in mHippoE-2 cells
Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding ...
ORGANISM(S): Mus musculus (Mouse) 
2022-10-13 | PXD034161 | Pride
Pulldown M6a Rna Lc-ms/ms 
GenomicsRNA pulldown target circGLS2
RNA pulldown target circGLS2
PRJNA786500 | ENA
ProteomicsE12.5 diencephalon tissues LC-MS of wild-type mice after RNA pulldown with Crnde sense and anti-sense mRNA probes.
In order to explore the lncRNA Crnde interacting proteins in mouse diencephalon tissues, we first designed and synthesized Crnde sense and anti-sense mRNA probes, and collected the diencephalon tissues of embryonic mice for RNA pulldown experiment, and identified the enriched products by mass spectr...
ORGANISM(S): Mus musculus (Mouse) 
2026-02-14 | PXD056797 | Pride
Diencephalon lc-ms rna pulldown crnde 
ProteomicsIdentification of proteins specifically binding to ac4C RNA probes
As a newly identified mRNA modification, the regulation of ac4C remains largely unexplored. RNA-binding proteins (RBPs) that specifically binds to ac4C modification and mediate downstream cellular activities (readers) have not been reported yet. We synthesized acetylated and non-acetylated RNA probe...
ORGANISM(S): Homo sapiens (Human) 
2021-07-20 | PXD027014 | Pride
Rna pulldown Ac4c Acetylated rna probes 
UnknownMultiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions.
Not available
S-EPMC10730167 | biostudies-literature
ProteomicsPulldown of RNA binding protein using SARS CoV 2 NSP1 RNA
RNA sensing is critical for RLR activation and downstream signaling. To identify molecules that are involved in modulating viral RNA recognition, we utilized biotin-labeled 60 nt single-stranded RNA (ssRNA) from SARS-CoV-2 NSP1 coding region (NSP1 ssRNA) to pull down proteins from RAW264.7 cells. Th...
ORGANISM(S): Mus musculus (Mouse) 
2026-04-08 | PXD064808 | Pride
Pulldown  rna binding protein  nsp1 rna  sars-cov-2 
GenomicsGas5 Pulldown Total and small RNAseq
Gas5 Pulldown Total and small RNAseq
PRJNA748426 | ENA
Proteomicsbiotin RNA pulldown assay of lnc-GD2H and mass spectrometry
Vectors carrying lnc-GD2H and antisense lnc-GD2H were linearized with the corresponding restriction enzymes to prepare template DNAs for in vitro transcription. Biotinylated RNAs were mixed with proteins extracted from C2C12 cells, followed by targeting of the RNAs with streptavidin beads. After SDS...
ORGANISM(S): Mus musculus (Mouse) 
2021-05-18 | PXD025292 | Pride
C2c12 Myoblast Biotin rna pulldown Ms Mice Lnc-gd2h 
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