Rpe-1 cells - OmicsDI

Show results for

Transcriptomics (6097)
Genomics (992)
Unknown (607)
Proteomics (164)
Metabolomics (34)
Other (9)
Multiomics (3)
Models (2)

Organisms

Homo sapiens (2817)
Mus musculus (1656)
Saccharomyces cerevisiae (320)
Drosophila melanogaster (165)
Rattus norvegicus (153)
Arabidopsis thaliana (89)
Schizosaccharomyces pombe (86)
Thermus thermophilus HB8 (69)
Caenorhabditis elegans (62)
Candida albicans (60)
Escherichia coli (56)
Danio rerio (55)
Bos taurus (46)
Gallus gallus (36)
Sus scrofa (34)
Mycobacterium tuberculosis (31)
Rhizobium leguminosarum (30)
Rattus rattus (27)
Staphylococcus aureus (26)
Escherichia coli str. K-12 substr. MG1655 (22)
Pseudomonas aeruginosa (21)
Trypanosoma brucei (18)
Bacillus subtilis (18)
Neisseria meningitidis (17)
Listeria monocytogenes (15)
Zea mays (15)
Pseudomonas putida (15)
Macaca mulatta (15)
Apis mellifera (14)
Campylobacter jejuni (13)

Organisms

Homo sapiens (127)
Mus musculus (24)
Danio rerio (4)
Macaca mulatta (2)
Rattus norvegicus (2)
Ostrea edulis (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (6691)
ENA (207)
EGA (161)
geo (74)
MassIVE (63)
pride (59)
MetaboLights (34)
jPOST (12)
LINCS (11)
iProX (8)
PanoramaPublic (4)
GPMDB (2)
PAXDB (2)
ExpressionAtlas (1)
BioModels (1)
Cell Collective (1)

Tissue

Epithelial cell (29)
Cell culture (20)
Retinal pigment epithelial cell (5)
Retinal pigment epithelium cell (4)
HTERT-RPE1 cell (3)
Choroid (2)
Primary cell (2)
Retina (2)
Blood cell (1)
Blood plasma (1)
Choroidal cell of the eye (1)
Ciliary body (1)
Embryonic stem cell (1)
Iris (1)
Kidney (1)
Monocyte (1)
Neuroblast proliferation (1)
Permanent cell line cell (1)
Pluripotent stem cell (1)
Retinal pigment epithelium (1)
Retinal pigment epithelium cell line (1)
Stem cell (1)

Disease

Normal (46)
Neuroblastoma (7)
Breast cancer (7)
Chronic lymphocytic leukemia (6)
Glioblastoma (4)
Rheumatoid arthritis (3)
Colorectal cancer (3)
Pre-diabetic (3)
Reference (3)
Adenocarcinoma (3)
Squamous Cell Carcinoma (2)
Malignant melanoma (2)
Leukemia (2)
Colon cancer (2)
Colon adenocarcinoma (2)
Chronic myeloid leukemia (2)
Head and neck squamous cell carcinoma (2)
Cancer (2)
Melanoma (2)
Mammary tumor (2)
Acute promyelocytic leukemia (2)
No disease (2)
Osteosarcoma (2)
Colorectal adenocarcinoma (2)
Prostate cancer (2)
Prostate carcinoma (2)
Carcinoma (2)
Lung cancer (2)
Central nervous system cancer (2)
Tumor bearing (1)

Technology Type

Mass Spectrometry (59)
Shotgun proteomics (23)
Mass spectrometry (22)
Affinity purification coupled with mass spectrometry proteomics (17)
Bottom-up proteomics (9)
Mass spectrometry assay (8)
Flow cytometry (7)
L1000 (7)
Data-independent acquisition (7)
Illumina HiSeq 2000 (6)
Illumina MiSeq (4)
Fluorescence imaging (4)
Fluorescence intensity (4)
NMR spectroscopy (4)
Illumina HiSeq 2500, ILLUMINA (3)
Illumina HiSeq 2500 (2)
Illumina CytoSNP 12 bead array, nanostring (1)
ILLUMINA, Illumina HiSeq 1000 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, NextSeq 500 (1)
Illumina HiSeq 4000, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanMethylation 450K (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA), ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Illumina NovaSeq 6000 (228)
NextSeq 500 (189)
Illumina HiSeq 2500 (133)
Illumina HiSeq 2000 (118)
Illumina HiSeq 4000 (118)
NextSeq 550 (57)
Illumina MiSeq (38)
NextSeq 2000 (34)
Illumina NovaSeq X (29)
Scanning hardware (24)
Illumina HiSeq 1500 (20)
Illumina Genome Analyzer II (18)
Illumina Genome Analyzer IIx (13)
GenePix 4000B [Axon Instruments] (13)
Axon GenePix 4000B scanning hardware (13)
Axon GenePix 4000A scanning hardware (12)
GenePix 4000A [Axon Instruments] (12)
ScanArray Express HT (12)
Illumina HiSeq 3000 (12)
DNBSEQ-G400 (10)
418 [Affymetrix] (9)
Axon- GenePix4000B (8)
ScanArray Lite [PerkinElmer] (7)
G2565AA DNA microarray scanner [Agilent] (7)
G2565BA DNA microarray scanner [Agilent] (7)
Variable Atmosphere Incubator (7)
Illumina HiSeq 1000 (7)
Other (6)
NA (6)
Element AVITI (5)

Publication Date

2010 (944)
2013 (718)
2014 (682)
2012 (656)
2015 (593)
2011 (523)
2016 (424)
2008 (319)
2009 (269)
2007 (201)
2021 (179)
2025 (149)
2023 (149)
2026 (146)
2022 (145)
2024 (133)
2020 (123)
2005 (118)
2017 (115)
2018 (98)
2019 (97)
2006 (97)
2004 (54)
2003 (11)
2002 (4)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
2A5A_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
4F2_MOUSE (1)
6PGD_MOUSE (1)
6PGL_MOUSE (1)
89462.XP_006039585.1 (1)
89462.XP_006039600.1 (1)
89462.XP_006039626.1 (1)
89462.XP_006039630.1 (1)
89462.XP_006039638.1 (1)
89462.XP_006039640.1 (1)
89462.XP_006039668.1 (1)
89462.XP_006039674.1 (1)
89462.XP_006039692.1 (1)
89462.XP_006039695.1 (1)
89462.XP_006039696.1 (1)
89462.XP_006039697.1 (1)
89462.XP_006039706.1 (1)
89462.XP_006039712.1 (1)
89462.XP_006039721.1 (1)

CHEBI ID

CHEBI:15428 (11)
CHEBI:15891 (11)
CHEBI:16919 (11)
CHEBI:6650 (10)
CHEBI:32816 (10)
CHEBI:30769 (10)
CHEBI:16958 (9)
CHEBI:16865 (9)
CHEBI:18012 (9)
CHEBI:27897 (9)
CHEBI:15354 (9)
CHEBI:25094 (8)
CHEBI:16335 (8)
CHEBI:17895 (8)
CHEBI:17295 (8)
CHEBI:17553 (7)
CHEBI:48430 (7)
CHEBI:17822 (7)
CHEBI:26271 (7)
CHEBI:18237 (7)
CHEBI:16811 (7)
CHEBI:25017 (7)
CHEBI:16610 (7)
CHEBI:17154 (7)
CHEBI:37024 (7)
CHEBI:27266 (7)
CHEBI:17203 (7)
CHEBI:18183 (7)
CHEBI:18050 (7)
CHEBI:29016 (7)

Metabolite Name

Taurine (6)
Choline (6)
Creatine (6)
Glycine (6)
Uridine (5)
Inosine (5)
Adenosine (5)
Spermidine (5)
Myo-inositol (5)
Tryptophan (4)
Proline (4)
Nicotinamide (4)
NAD+ (4)
Lysine (4)
Hypoxanthine (4)
Gamma-aminobutyric acid (4)
Arginine (4)
Methionine (4)
Valine (4)
Uracil (4)
Glycerol (4)
Beta-alanine (4)
ADP (4)
Maltol (3)
O-phosphoethanolamine (3)
Adenosine 5'-monophosphate (3)
Thioproline (3)
Sphinganine (3)
Phosphate (3)
Erythritol (3)

IsPrivate

False (1)

First Public Date

2025 (39)
2026 (33)
2023 (24)
2024 (22)
2020 (20)
2022 (13)
2021 (13)
2019 (12)
2014 (11)
2017 (7)
2018 (6)
2015 (4)
2013 (2)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (3731)
RNA-seq of coding RNA (753)
ChIP-seq (510)
RNA-seq of coding RNA from single cells (192)
ChIP-chip by tiling array (166)
Other (135)
Unknown experiment type (130)
ChIP-chip by array (109)
RNA-seq of non coding RNA (106)
Comparative genomic hybridization by array (97)
Methylation profiling by array (83)
Methylation profiling by high throughput sequencing (73)
Transcription profiling by tiling array (71)
RNA-seq of total RNA (50)
MicroRNA profiling by array (46)
Transcription profiling by RT-PCR (42)
Cell line - High-throughput sequencing (35)
DNA-seq (35)
ATAC-seq (24)
High-throughput sequencing (19)
Genotyping by array (19)
Animal - High-throughput sequencing (17)
Proteomic profiling by array (15)
CLIP-seq (14)
Spatial transcriptomics by high-throughput sequencing (14)
CUT&RUN (14)
Human - High-throughput sequencing (13)
MicroRNA profiling by high throughput sequencing (12)
RNAi profiling by array (11)
RIP-seq (11)

Release Date

2010 (952)
2013 (735)
2014 (700)
2012 (665)
2015 (619)
2011 (526)
2016 (449)
2008 (321)
2009 (272)
2021 (219)
2007 (206)
2025 (196)
2022 (177)
2020 (159)
2023 (156)
2024 (152)
2017 (137)
2019 (136)
2026 (120)
2005 (118)
2018 (115)
2006 (97)
2004 (53)
2003 (10)
2002 (4)

Lab affiliation

University of Bristol (8)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (6)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan (3)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (2)
University of Bristol, School of Biochemistry (2)
1Center for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, Virginia, USA (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Adele Niessen Professor of Ophthalmology Vice Chair for Research FM Kirby Center for Molecular Ophthalmology Scheie Eye Institute University of Pennsylvania (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (1)
Bioanalytical Mass Spectrometry Group,Max-Planck-Institute for Multidisciplinary Sciences,Goettingen, Germany (1)
Biomedical Research Center, University Hospital Hradec Kralove, Czech Republic (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Department of Biochemistry, Vanderbilt University, USA (1)
Department of Biomedical engineering, Lerner Research Institute, Cleveland Clinic (1)
Department of Cell Biology, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China (1)
Department of Chemistry, Imperial College London (1)
Department of Genome Integrity, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic (1)
Department of Medical Oncology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. (1)
Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Department of Molecular Cell Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Montebello, 0379 Oslo, Norway (1)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany (1)
Department of Ophthalmology, Johns Hopkins University School of Medicine (1)
Department of Pathology, Johns Hopkins Medical School, USA (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (1)
Department of Radiation Oncology, University of Texas Health Science Center at San Antonio (1)
Dipartimento di Scienze Chimiche, Farmaceutiche ed Agrarie, Università degli Studi di Ferrara (1)
Division of Radiation and Genome Stability, Dana-Farber Cancer Institute, Harvard Institutes of Medicine, USA (1)
Duke University, Albert Eye Research Institute (1)

Previous page
1 / 794
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 794
Next page

Sort by:

Relevance

Page size

TMT-MS of PCIF1 siRNAs treated RPE-1 cells

RPE-1 cells treated with the indicated siRNAs for 48 h were subjected to the tandem mass tag quantitative proteomics analysis.Carry out relative protein quantification analysis using tandem mass tag mass spectrometry in RPE-1 cells to investigate the mechanism underlying PCIF1 attenuates ciliation.

ORGANISM(S): Homo sapiens (Human)

2024-03-21 | PXD044338 | Pride

Mad2 knockdown in RPE-1 cells

Single-cell sequencing of RPE-1 cells with Mad2 knockdown

PRJEB33217 | ENA

Chemokine expression in retinal pigment epithelial cells in response to co-culture with activated T Cells

Purpose: To investigate the effects of T cell-derived cytokines on gene and protein expression of chemokines in a human RPE cell line (ARPE-19). Methods: We used an in vitro co-culture system in which the RPE and CD3/28-activated T cells were separated by a membrane. Differential gene expression in...

ORGANISM(S): Homo sapiens

2012-11-19 | E-GEOD-36331 | biostudies-arrayexpress

Replication maps of RPE-1 cells grown under various conditions

PRJNA454885 | ENA

RPE-1 and RPE-1 trisomic AHA p-c and steady state data

We developed a pulse-chase method in where fully SILAC (heavy, medium-heavy and Light) labelled cells were pulsed with Azidohomoalanine (AHA) and then chased for different length of times. In addition, steady state protein levels comparing the RPE- and RPE-1 trisomic cells by standard SILAC labeling...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-31 | MSV000080831 | MassIVE

Analysis of Golgi stress signalling pathways in RPE-1 cells

The aim of this project is to analyze the effects of Golgi stress induced by treatment with the ionophore nigericin in RPE-1 cells.

ORGANISM(S): Homo sapiens (Human)

2026-04-24 | PXD074941 | Pride

Misfolding Golgi Nigericin Rpe-1

Characterization of genomic and chromatin landscape of RPE-1 WT cells

PRJNA865654 | ENA

CRISPR knockout screening data and RNAsequencing in LINE-1(+) RPE cells

PRJNA491205 | ENA

RFX7 DNA binding landscape in RPE-1

PRJNA680773 | ENA

Overexpression of non-degradable SAS-6 KEN box mutant in RPE-1 cells

Stable clones of RPE-1 cells expressing tetracycline-inducible wild type SAS-6 or SAS-6ND were obtained via lentiviral gene transduction with the pLVX tet-on Advanced inducible gene expression system (Clontech). Stable expressors were derived by selection with 5 μg/mL puromycin (Sigma-Aldrich, UK). ...

ORGANISM(S): Homo sapiens

2025-01-27 | E-MTAB-13783 | biostudies-arrayexpress

Previous page
1 / 794
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 794
Next page

Sort by:

Relevance

Page size

7934 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

IsPrivate

First Public Date

Modelling Approach

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets