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ProteomicsIncreasing proteome depth while maintaining quantitative precision in short gradient data-independent acquisition proteomics
The combination of short liquid chromatography (LC) gradients and data independent acquisition (DIA) by mass spectrometry (MS) has proven its huge potential for high-throughput proteomics. However, the optimization of isolation window schemes resulting in a certain number of data points per peak (DP...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2023-05-10 | PXD036451 | Pride
Isolation windows Dia Multi-species Short-gradient 
ProteomicsOptimization of ultra fast nDIA proteomics approach
Rapid and comprehensive analysis of complex proteomes across large sample sets is essential to fulfill the potential of systems biology. We present a novel mass spectrometry (MS) method that integrates narrow-window data-independent acquisition (nDIA) with short-gradient micro-flow chromatography, e...
ORGANISM(S): Homo sapiens (Human) 
2026-01-14 | PXD055919 | Pride
Short gradient Proteomics Hela Ultra-fast Ndia 
UnknownMRI gradient-echo phase contrast of the brain at ultra-short TE with off-resonance saturation.
Not available
S-EPMC5960631 | biostudies-literature
UnknownTAVI in patients with low-flow low-gradient aortic stenosis-short-term and long-term outcomes.
Not available
S-EPMC9681695 | biostudies-literature
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana – Technical Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD038989 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana - Abiotic Stress Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD039004 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
UnknownQuantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana Using Short Gradient Multi-CV FAIMSpro BoxCar DIA.
Not available
S-EPMC10663867 | biostudies-literature
UnknownShort symmetric and highly selective asymmetric first and second order gradient modulated offset independent adiabaticity (GOIA) pulses for applications in clinical MRS and MRSI.
Not available
S-EPMC9933141 | biostudies-literature
UnknownMetagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary.
Not available
S-EPMC11200988 | biostudies-literature
TranscriptomicsTranscription profiling of mouse in vitro osteoblast and mesenchymal stem cell differentiation following exposure to 21% O(2) (ambient oxygen), 2% O(2) (hypoxia), and <0.02% O(2) (anoxia)
Vascular disruption following bony injury results in a hypoxic gradient within the wound microenvironment. Nevertheless, the effects of low oxygen tension on osteogenic precursors remain to be fully elucidated. In the present study, we investigated in vitro osteoblast and mesenchymal stem cell diffe...
ORGANISM(S): Mus musculus 
2005-07-11 | E-SMDB-2999 | biostudies-arrayexpress
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