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ProteomicsSupercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (co-solvent)
Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a vari-ety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent acquisition (nDIA) MS with 3% DMSO as a ...
ORGANISM(S): Homo sapiens (Human) 
2026-01-11 | PXD064180 | Pride
Mnba Dmso Supercharging Ndia-ms 
ProteomicsExpanding the global map of protein post translational modifications with PTMScan enrichment and nDIA analysis on the Orbitrap Astral
The study describes the use of PTMScan enrichment and LC-MS/MS analysis using Orbitrap Astral for the deep coverage of different PTM peptides from cells and tissue.
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2026-05-21 | PXD065579 | Pride
Ubiquitination Succinylation Ptm Methylation Ptmscan Orbitrap astral Ndia Acetylation Mass spec Dda Phosphorylation 
ProteomicsSupercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (solubility proteomics)
Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a variety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent ac-quisition (nDIA) MS with 3% DMSO as a ...
ORGANISM(S): Homo sapiens (Human) 
2026-01-12 | PXD064185 | Pride
Ml-792 Proteome Solubility shift Mg132 
ProteomicsOptimization of ultra fast nDIA proteomics approach
Rapid and comprehensive analysis of complex proteomes across large sample sets is essential to fulfill the potential of systems biology. We present a novel mass spectrometry (MS) method that integrates narrow-window data-independent acquisition (nDIA) with short-gradient micro-flow chromatography, e...
ORGANISM(S): Homo sapiens (Human) 
2026-01-14 | PXD055919 | Pride
Short gradient Proteomics Hela Ultra-fast Ndia 
UnknownInteraction between TNF and BmooMP-Alpha-I, a Zinc Metalloprotease Derived from Bothrops moojeni Snake Venom, Promotes Direct Proteolysis of This Cytokine: Molecular Modeling and Docking at a Glance.
Not available
S-EPMC4963855 | biostudies-literature
ProteomicsSupercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (TPP)
Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a variety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent ac-quisition (nDIA) MS with 3% DMSO as a ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-11-07 | MSV000099787 | MassIVE
ProteomicsSupercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (Method evaluation)
Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a variety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent ac-quisition (nDIA) MS with 3% DMSO as a ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-11-07 | MSV000099791 | MassIVE
ProteomicsSupercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (Method optimization)
Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a variety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent ac-quisition (nDIA) MS with 3% DMSO as a ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-11-07 | MSV000099789 | MassIVE
UnknownOne-Tip enables comprehensive proteome coverage in minimal cells and single zygotes.
Not available
S-EPMC10951212 | biostudies-literature
UnknownUltra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition.
Not available
S-EPMC11631760 | biostudies-literature
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