Spatially resolved

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Unknown (2038)
Genomics (552)
Transcriptomics (270)
Proteomics (152)
Other (147)
Metabolomics (13)
Methylation profiling (3)

Organisms

Homo sapiens (255)
Mus musculus (197)
Rattus norvegicus (10)
Gallus gallus (10)
synthetic construct (9)
Danio rerio (6)
Anableps anableps (3)
Mesocricetus auratus (3)
Arabidopsis thaliana (3)
Escherichia coli (3)
Escherichia coli str. K-12 substr. MG1655 (2)
Tetraodon nigroviridis (2)
Drosophila melanogaster (1)
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Sus scrofa domesticus (1)
Taeniopygia guttata (1)
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Mus (1)
Mus (1)
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cellular organisms (1)

Organisms

Homo sapiens (178)
Mus musculus (168)
Gallus gallus (9)
Rattus norvegicus (7)
Danio rerio (5)
Arabidopsis thaliana (5)
Anableps anableps (3)
Mesocricetus auratus (3)
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Tetraodon nigroviridis (2)
unidentified (2)
Sus scrofa domesticus (2)
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Escherichia coli str. K-12 substr. MG1655 (1)
Escherichia coli BW25113 (1)
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human skin metagenome (1)
Triticum aestivum (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
riverine metagenome (1)
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Repository

ENA (513)
geo (395)
pride (97)
biostudies-arrayexpress (51)
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Disease

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Cancer (1)
Barrett's esophagus (1)
Cardiovascular system disease (1)
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Cutaneous malignant melanoma 1 (1)
Disease free (1)
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Liver disease (1)
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Lung small cell carcinoma (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Mucinous adenocarcinoma (1)
Multiple sclerosis (1)
Myocardial infarction (1)
Neuroblastoma (1)
Parkinson's disease (1)
Salivary gland carcinoma (1)

Technology Type

Mass Spectrometry (99)
Shotgun proteomics (45)
Bottom-up proteomics (29)
Data-dependent acquisition (15)
Data-independent acquisition (15)
Mass spectrometry imaging (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Top-down proteomics (6)
Mass spectrometry assay (5)
Mass spectrometry (4)
MALDI (2)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
Q Exactive Plus (8)
LTQ Orbitrap Velos (7)
N/A (6)
NextSeq 500 (5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
Illumina HiSeq 4000 (4)
GC MS (4)
10X Genomics reagent kit (3)
Illumina HiSeq 2500 (3)
Orbitrap Exploris 480 (3)
GC-MS (3)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
10X Chromium Nuclei Isolation Kit (2)
Nanostring GeoMx spatial profiler (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
LTQ Velos ETD (2)
Hamamatsu Nanozoomer S60 (1)
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10X Genomics reagents (1)
Mastercycler pro S Thermocyler (Eppendorf); 2100 Bioanalyzer (Agilent) (1)
2100 Bioanalyzer (Agilent); Axio Imager.Z2 (ZEISS) (1)
CryoStar NX70 Cryostat (Epredia) (1)
10X Chromium On-Chip Multiplex (1)
Not applicable (1)
Illumina NovaSeq X (1)
NA (1)
- (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)

Publication Date

2026 (150)
2025 (129)
2024 (85)
2023 (73)
2022 (66)
2021 (34)
2016 (17)
2020 (13)
2019 (11)
2015 (6)
2017 (5)
2018 (5)
2012 (3)
2014 (2)
2013 (2)
2011 (2)
2010 (2)

CHEBI ID

CHEBI:74374 (1)
CHEBI:74231 (1)
CHEBI:75200 (1)
CHEBI:72065 (1)
CHEBI:74375 (1)
CHEBI:72058 (1)
CHEBI:74465 (1)
CHEBI:74372 (1)
CHEBI:74238 (1)
CHEBI:74371 (1)
CHEBI:74241 (1)
CHEBI:71727 (1)
CHEBI:134236 (1)
CHEBI:71728 (1)
CHEBI:134237 (1)
CHEBI:74369 (1)
CHEBI:74237 (1)
CHEBI:134490 (1)
CHEBI:136239 (1)
CHEBI:141589 (1)
CHEBI:136257 (1)
CHEBI:91039 (1)
CHEBI:136489 (1)
CHEBI:136235 (1)
CHEBI:136225 (1)
CHEBI:173071 (1)
CHEBI:173070 (1)
CHEBI:173069 (1)
CHEBI:173068 (1)
CHEBI:173067 (1)

Metabolite Name

Phosphatidylinositol 38:1(1-) (1)
Phosphatidylinositol 38:2(1-) (1)
Phosphatidylinositol 38:3(1-) (1)
Phosphatidylinositol 38:5(1-) (1)
Phosphatidylinositol 36:1(1-) (1)
Phosphatidylinositol 36:2(1-) (1)
Phosphatidylinositol 34:1(1-) (1)
Phosphatidylinositol 34:2(1-) (1)
Phosphatidylinositol 32:0(1-) (1)
Phosphatidylinositol 32:1(1-) (1)
Phosphatidylserine 36:1(1-) (1)
Phosphatidylserine 36:2 (1)
Phosphatidylglycerol 36:2(1-) (1)
Phosphatidylethanolamine 38:4 zwitterion (1)
Phosphatidylserine 34:1(1-) (1)
Phosphatidylethanolamine 36:1 zwitterion (1)
Phosphatidylethanolamine 36:2 zwitterion (1)
Phosphatidylethanolamine 36:3 (1)
Phosphatidylethanolamine 34:2 zwitterion (1)
Phosphatidic acid 36:2 (1)
Phosphatidic acid 34:1 (1)
Phosphatidylethanolamine 38:2 zwitterion (1)
Phosphatidylinositol 38:4 (1)
Phosphatidylinositol 36:3 (1)
Phosphatidylinositol 36:4 (1)
Phosphatidylglycerol 36:1 (1)
Phosphatidylglycerol 34:1 (1)
LPI(18:0) (1)
Campesta-5,7-dien-3beta-ol (1)
(5Z,7E)-(3S)-25-fluoro-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)

First Public Date

2026 (158)
2025 (105)
2024 (85)
2023 (59)
2022 (49)
2021 (31)
2020 (10)
2019 (6)
2016 (4)
2017 (3)
2018 (1)
2015 (1)
2014 (1)

Classification

bacteria (3)
protozoa (2)

Study type

Spatial transcriptomics by high-throughput sequencing (10)
Transcription profiling by array (10)
RNA-seq of coding RNA from single cells (10)
Single nucleus RNA sequencing (7)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (2)
ScATAC-seq (2)
Single-nucleus ATAC-seq (1)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (405)
2024 (275)
2023 (274)
2022 (274)
2021 (181)
2020 (119)
2019 (96)
2018 (96)
2017 (83)
2016 (73)
2026 (63)
2015 (43)
2014 (38)
2013 (20)
2012 (13)
2011 (11)
2010 (9)
2008 (7)
2009 (5)
2006 (3)
2007 (1)

Lab affiliation

Division of Molecular and Cellular Function School of Biological Science Faculty of Biology Medicine and Health The University of Manchester Manchester United Kingdom (3)
Dalian Institute of Chemical Physics (2)
Director of Women’s Health Research Women’s Service Line Inova Health System (2)
Discovery Proteomics Facility, University of Oxford (2)
Pacific Northwest National Laboratory (2)
Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
Systems Biology Ireland, University College Dublin (2)
Université de Lille, Sciences et Technologies - INSERM U1192 - Laboratoire PRISM (2)
Zhengzhou University (2)
hong kong baptist university (2)
1. Center for Translational Biomedical Research, University of North Carolina at Greensboro 2. Department of Chemistry & Biochemistry, University of North Carolina at Greensboro (1)
1. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark; 2. Proteomics and Singal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
1Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK (1)
Affiliated Hangzhou First People’s Hospital, State Key Laboratory of Medical Proteomics, School of Medicine, Westlake University, Hangzhou, Zhejiang Province, China. Westlake Center for Intelligent Proteomics, Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China. Research Center for Industries of the Future, School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China. (1)
Assistant Professor of Microbiology, Immunology, and Cancer Biology Associate Director for Diversity, Equity, and Inclusio at the Carter Immunology Center University of Virginia Charlottesville, VA (1)
Biological Engineering, MIT (1)
Carnegie Mass Spectrometry Facility (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163, Mannheim, Germany. (1)
Center for Thoracic Cancers, MGH Cancer Center Massachusetts General Hospital Harvard Medical School USA (1)
Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia (1)
College of chemistry and molecular engineering, Peking University (1)
College of chemistry and molecular engineering, Peking University. (1)
Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 14061, United States (1)
Department of Cardiology, Shenzhen Cardiovascular Minimally Invasive Medical Engineering Technology Research and Development Center, Shenzhen People’s Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen 518020, China (1)
Department of Chemical Biology College of Chemistry and Molecular Engineering Peking University (1)
Department of Chemistry Michigan State University (1)
Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada. (1)
Department of Chemistry, Yale University, New Haven, CT 06520 (1)
Department of Human Molecular Genetics and Biochemistry Sackler Faculty of Medicine Tel Aviv University Israel (1)

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Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies

Recent developments in spatially resolved -omics have enabled the joint study of gene expression, metabolite levels and tissue morphology, offering greater insights into biological pathways. Integrating these modalities from matched tissue sections to probe spatially-coordinated processes, howeve...

2025-12-03 | MTBLS13445 | MetaboLights

Spatially resolved characterization of tissue metabolic compartments in fasted and high-fat diet livers

Not available

ORGANISM(S): Mus musculus

ST002219 | MetabolomicsWorkbench

Spatially-guided metabolomics profiling of heterogeneous human tumor tissues

Bulk high-resolution mass spectrometry can provide sensitive and global snapshots of metabolites involved in cancer metabolism. However, intra-tumor heterogeneity (IntraTH) convolutes the cellular origins and tumor pathologies associated with the detected metabolites, thus making the elucidation ...

2026-04-15 | MTBLS13432 | MetaboLights

Ion mobility-based sterolomics reveals spatially and temporally distinctive sterol lipids in the mouse brain

Aberrant sterol lipid metabolism is associated with physiological dysfunctions in the aging brain and aging-dependent disorders such as neurodegenerative diseases. There is an unmet demand to comprehensively profile sterol lipids spatially and temporally in different brain regions during aging. Here...

2021-05-24 | MTBLS2457 | MetaboLights

massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation

Not available

ORGANISM(S): Mus musculus

ST002045 | MetabolomicsWorkbench

Spatially resolved proteome profiling of less than 200 cells from tomato fruit pericarp by integrating laser-capture microdissection with nanodroplet sample preparation

Proteomic data from technical developments of a nanoPOTS-based spatially resolved proteome profiling of <200 cells from tomato fruit pericarp.

ORGANISM(S): Solanum lycopersicum

2018-08-21 | PXD010806 | Pride

On-tissue spatially-resolved glycoproteomics guided by N-glycan imaging reveal global dysregulation of canine glioma glycoproteomic landscape

Here we present an approach to identify N-linked glycoproteins and deduce their spatial localization using a combination of MALDI N-glycan MSI and spatially-resolved glycoproteomics. We subjected glioma biopsies to on-tissue PNGaseF digestion and MALDI-MSI and found that the glycan HexNAc4-Hex5-NeuA...

ORGANISM(S): Canis familiaris (Dog) (Canis lupus familiaris)

2022-05-04 | PXD025537 | Pride

Glioblastoma Spatially resolved glycoproteomics Glycoproteomics Glycan imaging Haptoglobin Sialic acid Spatially resolved glycoproteomicsglycan imaging Maldi-msi Hypersialylation

Spatially Resolved Proteomics via Tissue Expansion

Spatially resolved proteomics is an emerging approach, however, it remains technically challenging due to the complexity of the tissue microsampling techniques and mass spectrometry analysis of nanoscale specimen volumes. Here, we describe an expansion proteomics method ProteomEx, a combination of t...

ORGANISM(S): Mus <genus>

2022-11-04 | PXD037950 |

On-tissue spatially-resolved glycoproteomics guided by N-glycan imaging reveal global dysregulation of canine glioma glycoproteomic landscape

ORGANISM(S): Canis lupus

2023-03-11 | PXD025826 | Pride

Glioblastoma Spatially-resolved Glycoproteomics Haptoglobin Sialic-acid Maldi-msi Hypersialylation Glycan-imaging

Spatially resolved epigenomic profiling of single cells in complex tissues

PRJNA789560 | ENA

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