Sullivan S S - OmicsDI

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Unknown (3410)
Transcriptomics (64)
Proteomics (39)
Genomics (16)
Metabolomics (6)
Genomic (4)

Organisms

Homo sapiens (44)
Mus musculus (29)
Candida albicans (6)
Arabidopsis thaliana (6)
Rattus norvegicus (4)
Candida dubliniensis (2)
Xenopus laevis (2)
Danio rerio (2)
Drosophila melanogaster (2)
Escherichia coli (2)
Morone saxatilis (1)
Plasmodium yoelii yoelii 17XNL (1)
Cardiocondyla obscurior (1)
Notophthalmus viridescens (1)
Arabidopsis lyrata (1)
Anaplasma phagocytophilum (1)
Toxoplasma gondii (1)
Burkholderia cepacia (1)
Mycobacterium tuberculosis (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
219334 (1)
Bacteria incertae sedis (1)
Emiliania huxleyi (1)
Emiliania huxleyi virus 207 (1)
Escherichia phage T7 (1)
Lactobacillus acidophilus NCFM (1)
Limosilactobacillus reuteri subsp. reuteri (1)
Macaca mulatta (1)
Nelumbo nucifera subsp. nucifera (1)

Organisms

viral metagenome (1)

Repository

biostudies-arrayexpress (68)
pride (35)
EGA (10)
dbGaP (4)
MassIVE (4)
MetaboLights (4)
GNPS (2)
geo (1)
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Tissue

Cell culture (6)
Brain (4)
Blood (2)
Epithelial cell (2)
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Plant cell (2)
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Barrett's esophagus (1)
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Skin (1)
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T cell (1)
Urinary bladder (1)

Disease

Optic atrophy 1 (2)
Normal (1)
Breast cancer (1)
COVID-19 (1)
Charcot-Marie-Tooth disease axonal type 2C (1)
Esophagus adenocarcinoma (1)
Insulinoma (1)
Lung cancer (1)
Multiple myeloma (1)
Plasmodium malariae malaria (1)
Proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome (1)
Temporal lobe epilepsy (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (16)
Bottom-up proteomics (8)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Elite (2)
Q Exactive (2)
Liquid Chromatography MS - positive - hilic (2)
Bioanalyser (1)
G2565BA DNA microarray scanner [Agilent] (1)
Variable Atmosphere Incubator (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
TSQ Vantage (Thermo Scientific) (1)

Publication Date

2013 (11)
2010 (11)
2014 (8)
2025 (8)
2016 (7)
2015 (7)
2008 (7)
2021 (6)
2011 (6)
2009 (6)
2019 (6)
2012 (5)
2024 (5)
2026 (5)
2022 (5)
2018 (2)
2023 (2)
2017 (2)
2005 (1)
2004 (1)
2020 (1)

CHEBI ID

CHEBI:15354 (3)
CHEBI:15356 (3)
CHEBI:15891 (3)
CHEBI:16335 (3)
CHEBI:16811 (3)
CHEBI:16865 (3)
CHEBI:17750 (3)
CHEBI:17822 (3)
CHEBI:18012 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:26271 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:29016 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:44897 (3)
CHEBI:14314 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)

Metabolite Name

Adenine (2)
Adenosine (2)
Citric acid (2)
Fumaric acid (2)
Uracil (2)
(2-aminoethyl)phosphonic acid (1)
(2R,3Z)-phycocyanobilin (1)
1-methylhistamine (1)
1-monolinolein (1)
11-trans-octadecenoic acid (1)
2'-deoxyadenosine (1)
2'-deoxycytidine (1)
2,5-dihydroxypyrazine (1)
2-Arachidonyl glycerol (1)
2-hydroxypyridine (1)
2-linoleoylglycerol (1)
2-palmitoylglycerol (1)
3,4-dihydroxybenzoic acid (1)
3-(3-hydroxyphenyl)propionic acid (1)
3-(4-hydroxyphenyl)propionic acid (1)
3-Deazaadenosine (1)
3-aminoisobutyric acid (1)
3-deoxyhexonic acid (1)
3-hydroxyisobutyric acid (1)
3-hydroxykynurenine (1)
3-hydroxypyridine (1)
3-indolepropionic acid (1)
3-methylpiperazine-2,5-dione (1)
4-amino-5-aminomethyl-2-methylpyrimidine (1)
4-amino-5-hydroxymethyl-2-methylpyrimidine (1)

First Public Date

2023 (1)

Study type

Transcription profiling by array (44)
RNA-seq of coding RNA (9)
ChIP-seq (5)
Comparative genomic hybridization by array (4)
Other (2)
Unknown experiment type (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (367)
2025 (355)
2023 (346)
2021 (326)
2024 (314)
2020 (254)
2019 (250)
2018 (212)
2017 (170)
2016 (147)
2014 (139)
2015 (128)
2013 (89)
2012 (74)
2011 (74)
2026 (56)
2009 (46)
2010 (41)
2008 (38)
2007 (12)
2005 (11)
2006 (8)
2002 (6)
2004 (5)
1999 (3)
2003 (2)
2000 (2)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Lecturer/Associate Professor, School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland (2)
2Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125 (1)
Arizona State University Biodesign Institute Neurodegenerative Disease Research Center (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Center for Bio/Molecular Science & Engineering (Code 6900), US Naval Research Laboratory, Washington DC, USA (1)
College of Medicine and Public Health, FHMRI, Flinders University, Australia (1)
Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (1)
Department of Biological Engineering (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research (CNCR), Amsterdam Neuroscience, VU University Amsterdam, The Netherlands (1)
Department of Neurology, Johns Hopkins School of Medicine (1)
Department of Pathology Cancer Center Stony Brook University (1)
Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland. Centre for Systems Medicine, Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, 123 St Stephen’s Green, Dublin 2, Ireland. (1)
Dept. of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. (1)
Division of Geological and Planetary Sciences, California Institute of Technology, USA (1)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Institute for Research in Biomedicine, IRB Barcelona, The Barcelona Institute of Science and Technology, BIST (1)
Institute of Molecular, Cell and Systems Biology, University of Glasgow, UK (1)
Joslin Diabetes Center/Harvard Medical School (1)
Koch Institute for Integrative Cancer Research at Massachusetts Institute of Technology (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP) Institut Curie (1)
Malaria Immunology Laboratory, The Francis Crick Institute, London, UK (1)
Max Planck Unit for the Science of Pathogens, D-10117 Berlin, Germany Institute for Biology, Humboldt University, D-10115 Berlin, Germany (1)
Oerthbio (1)
Oregon State University (1)
Professor, Human Biology, Fred Hutchinson Cancer Center, USA (1)
School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin (1)
School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P. R. China (1)
Stanford University Canary Center at Stanford for Cancer Early Detection (1)

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The impact of weight and race on perceptions of anorexia nervosa: a replication and extension of Varnado-Sullivan et al. (2020).

Not available

S-EPMC12043770 | biostudies-literature

A CENP-S/X complex assembles at the centromere in S and G2 phases of the human cell cycle.

Not available

S-EPMC3938055 | biostudies-literature

No Difference in 5-year Clinical or Radiographic Outcomes Between Kinematic and Mechanical Alignment in TKA: A Randomized Controlled Trial.

Not available

S-EPMC7319387 | biostudies-literature

The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression.

Not available

S-EPMC4813472 | biostudies-literature

CDC7-independent G1/S transition revealed by targeted protein degradation.

Not available

S-EPMC9106935 | biostudies-literature

Murine alveolar macrophage cell line MH-S was transduced with lentivirus expressing GFP alone or GFP plus murine MFSD7C tagged with Myc and FLAG epitopes.

We used immunoprecipitation (IP) and mass spectrometry (MS) to identify proteins that interact with MFSD7C. Because an anti-MFSD7C monoclonal antibody is not available, we used MFSD7C tagged with both Myc and FLAG epitopes in a MFSD7C-expressing murine alveolar macrophage cell line MH-S (Supplementa...

ORGANISM(S): Mus musculus (Mouse)

2020-08-20 | PXD021016 | Pride

Longitudinal, strain-specific Staphylococcus aureus introduction and transmission events in households of children with community-associated meticillin-resistant S aureus skin and soft tissue infection: a prospective cohort study.

Not available

S-EPMC6995751 | biostudies-literature

Inhibiting Fungal Multidrug Resistance by Disrupting an Activator-Mediator Interaction With the Small Molecule iKIX1

Eukaryotic transcription activators stimulate the expression of specific sets of target genes through recruitment of co-activators such as the RNA polymerase II-interacting Mediator complex. We previously identified an activator-targeted ~85 amino acid three-helix bundle KIX domain in the human MED1...

ORGANISM(S): Saccharomyces cerevisiae

2015-12-15 | E-GEOD-74361 | biostudies-arrayexpress

Connecting race and place: a county-level analysis of White, Black, and Hispanic HIV prevalence, poverty, and level of urbanization.

Not available

S-EPMC4056233 | biostudies-literature

Caspase-4 and Caspase-5 Coordinate the Sensing of Streptococcus pyogenes Extracellular vesicles

Caspase-4 and caspase-5 have been linked to the sensing of Gram-negative bacteria and their extracellular vesicles (EVs). Recent studies suggested that Gram-positive bacteria can be sensed through signaling cascades involving these two caspases. In the present study, we report that S. pyogenes secre...

ORGANISM(S): Homo sapiens (Human)

2025-10-20 | PXD046570 | Pride

S. pyogenes Nlrp3 Caspases

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