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ModelsBand2012_DII-Venus_FullModel
This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton AM, French AP, Brunoud G, Sato EM, Wilson MH, Péret B, Oliva M, Swarup R, Sairanen I,...
2024-09-02 | BIOMD0000000413 | BioModels
ModelsBand2012_DII-Venus_ReducedModel
This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton A...
2024-09-02 | BIOMD0000000414 | BioModels
TranscriptomicsTranscription profiling of human imatinib-sensitive and imatinib-resistant cells compared in the absence of imatinib
Both imatinib-sensitive and imatinib-resistant cells were compared in the absence of imatinib. The resistant cells in the presence of imatinib were compared to the sample in the absence of imatinib. The sample from the resistant cells in the presence of imatinib was labelled in duplicate to assess f...
ORGANISM(S): Homo sapiens 
2003-11-30 | E-MEXP-21 | biostudies-arrayexpress
ProteomicsGlobal proteome analysis of shROR2 MNNG cells
MNNG cells expressing a doxycycline (DOX)-inducible non-targeting shRNA (shCTRL) construct, or three independent shRNA constructs targeting ROR2 (shROR2 1, shROR2 2 and shROR2 3), were grown for 7 days in the presence of 5 µg/ml DOX prior to extraction.
ORGANISM(S): Homo sapiens (Human) 
2026-07-28 | PXD077022 | Pride
Ror2 Osteosarcoma 
ProteomicsCo-IP experiment with Pdr3 under mitochondrial import impairment
Co-IP experiment from lysates derived from V5-tagged Pdr3 cells analyzed on a Exploris 480
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2025-10-16 | PXD066688 | Pride
Mitochondria Mts Yeast Immunoprecipitation V5 
ProteomicsSurface and global proteome profiling of osteosarcoma patient derived xenografts
This study analyzed 22 unique OS patient-derived xenografts (PDXs) using proteomics to identify surface proteins for potential immunotherapeutic targeting. Plasma membranes were enriched using density gradient ultracentrifugation and compared to a reference standard of 12 immortalized non-OS cell li...
ORGANISM(S): Homo sapiens (Human) 
2026-07-28 | PXD075484 | Pride
Osteosarcoma 
ProteomicsMrj1HA AP-MS in Cryptococcus neoformans
The opportunistic fungal pathogen Cryptococcus neoformans must adapt to the mammalian environment to establish an infection. Proteins facilitating adaptation to novel environments, such as chaperones, may be required for virulence. In this study, we identified a novel mitochondrial co-chaperone, Mrj...
ORGANISM(S): Cryptococcus neoformans var. grubii H99S 
2020-06-12 | PXD013659 | Pride
Cryptococcus neoformans 
ProteomicsDnj4HA AP-MS in Cryptococcus neoformans
Proteins which act as histone chaperones ensure genomic integrity during routine processes such as DNA replication and transcription as well as DNA repair upon damage. Herein, we identify a nuclear J domain protein, Dnj4, which interacts with histones 3 and 4 as well as Hsp71 as demonstrated in an A...
ORGANISM(S): Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii) 
2021-12-15 | PXD028087 | Pride
Histone Co-chaperone Cryptococcus neoformans J domain protein 
ProteomicsMechanism and function of DNA replication-independent DNA-protein crosslink repair via the SUMO pathway
DNA-protein crosslinks (DPCs) obstruct essential DNA transactions, posing a serious threat to genome stability and functionality. DPCs are proteolytically processed in a ubiquitin- and DNA replication-dependent manner by SPRTN or the proteasome but can also be resolved via targeted SUMOylation. Howe...
ORGANISM(S): Xenopus laevis (African clawed frog) 
2021-08-06 | PXD021947 | Pride
Rnf4 Xenopus Dpc Chromass Dna damage Replication Sumo Pias4 
TranscriptomicsTranscription profiling of fission yeast Pht1 (H2A.Z) deletion mutants
Histone variant H2A.Z has a conserved role in genome stability, although it remains unclear how this is mediated. Here we demonstrate that the fission yeast Swr1 1 ATPase inserts H2A.Z (Pht1) into chromatin and Kat5 acetyltransferase (Mst1) acetylates it. Deletion or an unacetylatable mutation of Ph...
ORGANISM(S): Schizosaccharomyces pombe 
2010-11-05 | E-TABM-842 | biostudies-arrayexpress
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