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MetabolomicsA general non-self response as part of plant immunity
Plants, like other multicellular lifeforms, are colonized by microorganisms. How plants respond to their microbiota is currently not well understood. We used a phylogenetically diverse set of 39 endogenous bacterial strains from Arabidopsis thaliana leaves to assess host transcriptional and metaboli...
2021-09-13 | MTBLS2522 | MetaboLights
TranscriptomicsComparison of Expression Profiles for Agrobacterium tumefaciens visR mutant to wild-type strain.
Many bacteria colonize surfaces and transition to a sessile mode of growth. The plant pathogen Agrobacterium tumefaciens produces a unipolar polysaccharide (UPP) adhesin at single cell poles that contact surfaces. Here we report that elevated levels of the intracellular signal cyclic diguanosine mon...
ORGANISM(S): Agrobacterium tumefaciens 
2014-08-21 | E-GEOD-60565 | biostudies-arrayexpress
MetabolomicsJasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics
Foliar stomatal movements are critical for regulating plant water loss and gas exchange. Elevated carbon dioxide (CO2) levels are known to induce stomatal closure. However, the current knowledge on CO2 signal transduction in stomatal guard cells is limited. Here we report metabolomic responses of Br...
2017-04-25 | MTBLS312 | MetaboLights
ProteomicsDigital Light Processing 3D Printing Enables Versatile Fabrication of Human Engineered Heart Tissues
While cell models are routinely used to study cardiac molecular biology, in vitro systems fall far short of mimicking the metabolic and sarcomere structural maturity of intact cardiac tissue. Achieving a mature cardiomyocyte (CM) phenotype is essential for creating a physiologically relevant environ...
ORGANISM(S): Homo sapiens (Human) 
2026-09-21 | PXD074288 | Pride
Human engineered heart tissues Digital light processing 
ProteomicsSaLT&PepPr is an Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
Cell lysates were adjusted to 5% SDS, and 20 ugs was reduced with 10 mM DTT and alkylated with 25 mM iodoacetamide followed by digestion with 1:15 trypsin using an S-trap at 47 degC for 1 h. Lyophilized peptides were reconstituted at 0.5 ugs/uL, and a study pool QC sample was made by mixing equal vo...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-12 | MSV000093088 | MassIVE
ProteomicsZimmerman and Counter TurboID of PAX3-FOXO1 fusion protein
Label free quantitative LC-MS/MS anaysis of BioID enriched proteins.
ORGANISM(S): Homo sapiens (Human) 
2026-03-26 | PXD047629 | Pride
Proteomics Bioid Interaction 
ProteomicsZimmerman and Counter TurboID of rhabdomyosarcoma fusion proteins.
Quantitative label free proteomics of BioID enriched proteins
ORGANISM(S): Homo sapiens (Human) 
2026-03-26 | PXD047630 | Pride
Bioid Proteomics Interaction 
ProteomicsSelective PROTAC-mediated degradation of SMARCA2 is efficacious in SMARCA4 mutant cancers
The mammalian SWI/SNF helicase SMARCA4 is frequently mutated in cancer and inactivation results in a cellular dependence on its paralog, SMARCA2, thus making SMARCA2 an attractive synthetic lethal target. However, published data indicates that achieving a high degree of SMARCA2 selectivity is likely...
ORGANISM(S): Homo sapiens (Human) 
2022-09-22 | PXD036865 | Pride
Human Ubiquityome Tmt Isobaric labeling Degrader Proteome Protac 
TranscriptomicsAtlantic salmon (Salmo salar) liver transcriptome response to diets containing camelina products
This study was performed to investigate assess the impacts of CO and/or CM containing diets on Atlantic salmon hepatic gene expression in order to identify candidate molecular biomarkers of responses to camelina-containing diets. Atlantic salmon were fed diets with complete or partial replacement of...
ORGANISM(S): Salmo salar 
2015-05-12 | E-GEOD-56784 | biostudies-arrayexpress
ProteomicsTurboID of EWS-FLI1 and EWS-P3 fusion proteins
TurboID of EWS-FLI1 and EWS-P3 fusion proteins coupled with nanoscale capillary chromatography and label free quantitation.
ORGANISM(S): Homo sapiens (Human) 
2026-03-26 | PXD051746 | Pride
Bioid Label free 
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