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ProteomicsRapid Histone Post-Translational Modification Analysis Using Alternative Proteases and Tandem Mass Tags (RIPUP)
Histone post-translational modifications (PTMs) alter chromatin dynamics and contribute to the regulation of gene expression in health and disease. Mass spectrometry-based analysis is the gold-standard for histone PTM analysis, but it remains constrained by inefficient sample preparation workflows r...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2026-06-20 | PXD073683 | Pride
Post-translational modifications Histones Proteases Lc-ms/ms 
ProteomicsCovalent Protein Painting on Cancer Cell Lines
Cancer cells were labeled with Covalent Protein Painting and resulting peptides analyzed by mass spectrometry. For further information, please see: bioRxiv 2020.01.31.929117; doi: https://doi.org/10.1101/2020.01.31.929117
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-02-28 | MSV000085034 | MassIVE
ProteomicsCFTR interactome
The uploaded files are the RAW files used to generate the CFTR interactome dataset. The raw data were searched with ProLuCID against the human IPI database version 3.23 and search results were filtered with DTASelect 2.1.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-08-13 | MSV000079235 | MassIVE
ProteomicsThe effects of Alcohol Dependence on the CSF Proteome in Mice: Evidence for Blood-Brain Barrier Dysfunction and Neuroinflammation
A DIA analysis of CSF from individual mice undergoing chronic intermittent ethanol via two-bottle choice (non dependent) method versus vapor group and two bottle choice (dependent).
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2025-11-03 | MSV000099732 | MassIVE
ProteomicsProteome Plasticity in Drosophila Hybrids
This submission contains 3 different datasets: - series A: D. melanogaster female ? D. simulans male embryos vs internal standard of pooled D. simulans and D. melanogaster (1:1) embryos - series B: D. simulans female ? D. melanogaster male embryos vs internal standard of pooled D. simulans and D. m...
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) Drosophila Simulans (ncbitaxon:7240) 
MSV000081535 | MassIVE
ProteomicsImpact of the identification strategy on reproducibility of DDA and DIA results
Study of the impact of the identification strategy used for DDA and DIA results
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-17 | MSV000081719 | MassIVE
OtherDigestion and depletion of abundant proteins improves proteomic coverage.
Data from Yates lab web site. Experiment: yeast control replicate 2, file: 120211_Yeast_Control2_Step02.mzml. Published as part of Nat Methods. 2013 Jan;10(1):54-6 9 . From the Abstract: {{i}} We exploited the abundance-dependent Michaelis-Menten kinetics of trypsin digestion to selectively digest ...
ORGANISM(S): Yeast 
GPM32320001404 | GPMDB
ProteomicsClathrin IP_mouse sciatic nerve axons_Roylab_UCSD
Sciatic nerve axon segments from adult mouse were isolated. Following enzymatic digestion, lysate was subjected to incubation with beads conjugated with either clathrin heavy chain antibody or control IgG antibody for clathrin immunoprecipitation. MudPIT analysis was subsequently performed to identi...
ORGANISM(S): Mus musculus (Mouse) 
2021-08-12 | PXD027857 | Pride
Clathrin Axons Sciatic nerves 
ProteomicsAn ultrasensitive method for analysis of viral spike N-glycoforms
Viruses can evade the host immune system by displaying numerous glycans on their surface "spike-proteins" that cover immune epitopes. We have developed an ultrasensitive "single pot" method to assess glycan occupancy and the extent of glycan processing from high-mannose to complex forms at each N-gl...
ORGANISM(S): Bg505 Sosip.664 Md39 Bg505 Sosip.664 Homo Sapiens (ncbitaxon:9606) 
2021-05-12 | MSV000087414 | MassIVE
ProteomicsStructural Analysis of Hippocampal Kinase Signal Transduction
Kinases are a major clinical target for human diseases. Identifying the proteins that interact with kinases in vivo will provide information on unreported substrates and will potentially lead to more specific methods for therapeutic kinase regulation. Here, endogenous immunoprecipitations of evolu...
ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116) 
2018-05-23 | MSV000082390 | MassIVE
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