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ProteomicsProteomic LFQ Meyerozoyma guillermondii
LFQ Proteomic from unconventional yeast Meyerozoyma guilliermondii
ORGANISM(S): Meyerozyma Guilliermondii (ncbitaxon:4929) Environmental Samples <bacillariophyta> (ncbitaxon:33858) 
2025-04-10 | MSV000097603 | MassIVE
ProteomicsBenchmarking LFQ, SILAC and MS2/MS3-based TMT quantification strategies for large-scale phosphoproteomics
Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but reproducible and multiplexed quantification remains challenging especially for analysis of post-translational modifications (PTMs), such as phosphorylation. Here we compared the most popular quantification techniques for phos...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2018-03-13 | PXD007145 | Pride
Phosphoproteomics Ms3 Ms2 Tmt Silac Lfq Technical Benchmark Quantification 
ProteomicsLabel-Free Phosphoproteomics Profiling of Fission Yeast Schizosaccharomyces pombe
The phosphorylation of proteins modulates various functions of proteins and plays an important role in regulation of cell signaling. In the recent years, the label-free quantitative (LFQ) phos-phoproteomics has become the powerful tool to analyze the phosphorylation of proteins within the complex sa...
ORGANISM(S): Schizosaccharomyces pombe 927 
2021-02-12 | PXD023818 | Pride
Pgc Schizosaccharomyces pombe Sax Lfq phosphoproteomics 
ProteomicsDesign and experimental evaluation of a minimal, innocuous watermarking strategy to distinguish near-identical DNA and RNA sequences
F. Boonekamp et al., (2019) describe an innocuous watermarking strategy for coding regions that enables the discrimination of DNA and mRNA by sequencing through a k-mer approach and facilitates selective editing of watermarked and non-watermarked sequences. Shot-gun proteomics (LFQ) was performed on...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-09-21 | PXD016914 | Pride
Yeast Lfq Proteomics 
ProteomicsImpact of Alanyl-tRNA Synthetase Editing Deficiency in Yeast
Aminoacyl-tRNA synthetases (aaRSs) are essential enzymes that provide the ribosome with aminoacyl-tRNA substrates for protein synthesis. Mutations in aaRSs lead to various neurological disorders in humans. Many aaRSs utilize editing to prevent error propagation during translation. Editing defects in...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-08-26 | PXD026930 | Pride
Label-free quantitative proteomics Yeast alars variants 
ProteomicsIdentification of the L-A helper virus from native yeast cell extract
Identification of higher-order viral states of the L-A helper virus and polysomal assemblies in yeast native cell extract.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2024-05-12 | PXD034431 | Pride
Yeast l-a helper virus Cryo-em 
ProteomicsA comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics
A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics using SCIEX TripleTOF5600 and 6600+, Orbitrap QE-HFX, Waters Synapt GS-Si and Synapt XS and Bruker timsTOF Pro.
ORGANISM(S): Candida albicans (Yeast) Homo sapiens (Human) Escherichia coli 
2022-02-14 | PXD028735 | Pride
Swath Dia Benchmark 
ProteomicsActivity guided profiling of yeast proteasome - protein extraction test
This experiment compared the impact of protein extraction conditions on the identification and quantification of proteasome subunits in WT yeast. It involved comparing proteins extracted from identical WT yeast samples under two different conditions: native and denaturing (in the presence of SDS and...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2024-02-15 | PXD048380 | Pride
Native extraction Proteasome Yeast lfq 
ProteomicsPhospho-regulation of Cdc48/p97 cofactor protein Shp1/p47 in budding yeast
Shp1/p47 is a cofactor of the Cdc48/p97 complex involved in the energy-dependent segregation of intracellular aggregates and multiprotein complexes. We identified two serine residues (S108 and S315) in the S. Cerevisiae protein Shp1 which increase in phosphorylation upon various cell stresses such a...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-01-30 | PXD035819 | Pride
Ubx domain Stress Phosphorylation Torc1 Protein degradation Ubx1 Proteostasis 
ProteomicsInsight into fermented and non-fermented Spirulina water and ethanol extract antioxidant activity at a proteome level on a yeast cell model
The aim of this study was to explore the antioxidative activity of fermented and non-fermented Spirulina extracts at the proteome level using yeast Saccharomyces cerevisiae as a model organism.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-10-11 | PXD027102 | Pride
Spirulina  lactic acid fermentation  saccharomyces cerevisiae  ethanol  proteome  antioxidant  stress response 
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