Bottom-up hdx - OmicsDI

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Professor of Chemistry, Immunology, Medicine Department of Chemistry, MSC 1134-196-525 Washington University in St. Louis One Brookings Drive St. Louis, Mo 63130 Phone: 314-935-4814; Fax: 314-935-7484 Dept: https://chemistry.wustl.edu/people/michael-l-gross Lab: https://mgrosslab.com/ (2)
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Chemical Proteomics, Division of Chemistry I, Department of Medical Biochemistry and Biophysics Karolinska Institutet, Stockholm, Sweden (1)
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Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT, USA (1)
Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic Institute of Physiology of the Czech Academy of Sciences, Laboratory of Structural Biology of Signaling Proteins, Division BIOCEV, Vestec, Czech Republic (1)
Division of Infection Medicine, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University, Sweden (1)
Division of Infection Medicine, Department of Clinical Sciences, Faculty of Medicine, Lund University, Klinikgatan 26, 222 42 Lund, Sweden (1)

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Structural aspects of FOXO4 binding to DAF16 investigated with FPOP using both bottom-up and top-down MS.

A combination of covalent labelling techniques and mass spectrometry (MS) is currently a progressive approach for the de-riving insights relating to the mapping of protein surfaces or protein-ligand interactions. In this study, we mapped an interac-tion interface between DNA binding domain (DBD) of ...

ORGANISM(S): Homo sapiens (Human)

2022-02-14 | PXD027624 | Pride

RSV nonstructural protein 1 (NS1) HDX LC-MS data

Raw liquid chromatography-mass spectrometry (LC-MS) datafiles acquired for hydrogen-deuterium exchange (HDX) of RSV nonstructural protein 1 (NS1)

ORGANISM(S): Human Respiratory syncytial virus 9320

2025-05-07 | PXD054005 | Pride

Rsv ns1 hdx-ms

Interactome analyses reveal profound proteasome structural and functional rearrangements throughout mammalian spermatogenesis

Bottom-up, top-down proteomics and HDX-MS analysis of spermatoproteasome immunopurified from bovin testes and/or rat germ cells.

ORGANISM(S): Bos taurus (Bovine) Rattus norvegicus (Rat)

2022-04-07 | PXD027436 | Pride

Proteasome Hydrogen-deuterium exchange Top-down proteomics Bottom-up proteomics Spermatoproteasome

Bottom-up mapping of RSV nonstructural protein 1 (NS1) for HDX-MS data analysis

LC-MS/MS analysis of pepsin-digested RSV-NS1 protein to identify peptides for HDX-MS data processing

ORGANISM(S): Respiratory syncytial virus

2025-05-07 | PXD054004 | Pride

Ns1 Rsv Hdx-ms

Epitope analysis of the complex of CD73 and HB0038 by HDX-MS

Epitope analysis of the complex of CD73 antigen and the anti-CD73 antibody HB0038 by HDX-MS

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD057867 | Pride

Cd73 hb0038 hdx-ms

HDX-MS analysis of p110a in complex with regulatory subunits

HDX-MS was used to map the changes in conformational dynamics in the catalytic subunit of PI3Ka, p110a, in complex with the following five reguatory subunits: p85a, p85b, p55g, p55a, p50a. Apo and pY activated states were also compared between the three splice variants encoded by PIK3R1. No signific...

ORGANISM(S): Homo sapiens (Human)

2025-11-20 | PXD069057 | Pride

Hdx-ms Pi3ka P85

Analysis of mini-SHIP1 with pY Peptide by HDX-MS

Hydrogen deuterium exchange mass spectrometry (HDX-MS) was used to analyze how the mini-SHIP1 construct interacts with receptor-derived phosphotryrosine peptides (pY) to probe how these peptides regulate SHIP1 autoinhibition. This HDX-MS helped to identify intramolecular contacts involved in the reg...

ORGANISM(S): Homo sapiens (Human)

2025-10-15 | PXD061719 | Pride

Ship1 Hdx-ms

HDX-MS of Immobilized Staph Enterotoxin B with Neutralizing Serum

Elucidating the interactions that drive antigen recognition is central to understanding antibody-based protection and is vital for the rational design of immunogens. Often, structural knowledge of epitopes targeted by antibodies is derived from isolated studies of monoclonal antibodies, for which nu...

ORGANISM(S): Mus musculus (Mouse)

2025-10-27 | PXD051156 | Pride

Hdx-ms Serum hdx Seb Immobilized hdx

HDX of SEB and Neutralizing mAbs

ORGANISM(S): Mus musculus (Mouse)

2025-10-27 | PXD051141 | Pride

Hdx-ms Hydorgen deuterium exchange Seb

PrIntMap-R: An Online Application for Intraprotein Intensity and Peptide Visualization from Bottom-Up Proteomics.

Not available

S-EPMC9904286 | biostudies-literature

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