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ProteomicsUltrafast and Reproducible Proteomics from Small amounts of Heart Tissue Enabled by Azo and timsTOF Pro
Data for the manuscript "Ultrafast and Reproducible Proteomics from Small amounts of Heart Tissue Enabled by Azo and timsTOF Pro".
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-05-21 | MSV000087476 | MassIVE
ProteomicsPASEF technology on timsTOF Pro improves quality of FPOP analysis
Fast photochemical oxidation of proteins (FPOP) is a modern technique for studying protein folding, conformations, interactions, etc. In this work, timsTOF Pro mass spectrometer coupled with trapped ion mobility spectrometry was used for identification of oxidative modifications in a model protein. ...
ORGANISM(S): Homo sapiens (Human) 
2021-06-10 | PXD020509 | Pride
Tims Pasef Timstof Protein footprinting Hydroxyl radical Fpop 
MetabolomicsComparison of popular enrichment methods for untargeted in vitro metabolomics.

Introduction

Untargeted metabolomics is a popular method by which researchers measure a large portion of the metabolites present in a biological system at once. This approach usually results in complex data sets containing tens to hundreds of thousands of observations whi...

2025-08-11 | MTBLS12332 | MetaboLights
Proteomicsdia-PASEF HeLa dilution series 0.2ng - 200ng on Bruker timsTOF Pro 2
Different sample preparation methods were tested for HeLa proteome analysis. A sample obtained using sodium deoxycholate-based lysis allowed identification of the highest number of proteins. For this sample, a dilution series was acquired in triplicates ranging from 0.2ng to 200ng. All measurements ...
ORGANISM(S): Homo sapiens (Human) 
2022-06-20 | PXD029836 | Pride
Dia-pasef diapasef dia-nn hela 
UnknownOxonium Ion-Guided Optimization of Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro.
Not available
S-EPMC9853368 | biostudies-literature
ProteomicsLC-MS/MS interactomics analysis of Praf2 with timsTOF Pro
LC-MS/MS interactomics analysis of Praf2 using TurboID with timsTOF Pro.
ORGANISM(S): Homo sapiens (Human) 
2023-12-20 | PXD029019 | Pride
Turboid Interactomics Praf2 Timstof pro Lc-ms/ms 
UnknownA de novo MS1 feature detector for the Bruker timsTOF Pro.
Not available
S-EPMC9710787 | biostudies-literature
ProteomicsProteomic Analysis of Human Conjunctival Cells and Tears Collected with Schirmer Strips Using TimsTOF Pro
This study aimed to investigate the human tear proteins extracted from whole (W) Schirmer strips (ScS) and their two parts, the bulb (B) and the rest of the strip (R) with a comprehensive proteomic approach using a trapped ion mobility mass spectrometer, the timsTOF Pro. Eight ScS were collected fro...
ORGANISM(S): Homo sapiens (Human) 
2022-01-27 | PXD030334 | Pride
Proteomics Conjunctival cells Schirmer strips Tears Timstof pro 
ProteomicsProteomics Tool Spike-in dataset analyzed on a timsTOF Pro
Label-free proteomics enables the unbiased quantification of thousands of proteins across large sample cohorts. Commonly used mass spectrometry-based proteomic workflows rely on data dependent acquisition (DDA). However, its stochastic selection of peptide features for fragmentation-based identifica...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2021-07-10 | PXD021425 | Pride
Timstof pro Ion mobility spectrometry 
ProteomicsOxonium Ion-Guided Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro
Spatial separation of ions in the gas-phase, providing information about their size as collisional cross-sections, can readily be achieved through ion mobility. The timsTOF Pro combines a trapped ion mobility device with a quadrupole, collision cell and a time-of-flight analyser to enable the analys...
ORGANISM(S): Homo sapiens (Human) 
2023-01-17 | PXD034845 | Pride
Tims N-glycopeptides Oxonium ions Plasma Neutrophils Ion mobility 
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