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ProteomicsCharacterization of chromatin associated RNA-binding proteins by SPACE
Chromatin processes such as DNA replication, transcription and RNA processing are mediated by intermolecular transactions among proteins, RNAs and the genome. Although DNA-protein and RNA-protein interactions have been studied extensively, reliable and efficient identification of chromatin-associate...
ORGANISM(S): Mus musculus (Mouse) 
2021-11-25 | PXD023903 | Pride
Proteomics Pluripotency Idr Chromatin Dazl Rbp 
ProteomicsMDM2 influenced chromatin-associated phospho-peptides in T47D cells
Employing a stable isotope labeling in cell culture analysis in T47D breast cancer cells (expressing mtp53 L194F), we uncovered several chromatin-associated DNA replication and repair factors as MDM2-regulated (by MDM2 inducible knock-down) phosphoproteins, including 53BP1
ORGANISM(S): Homo sapiens (Human) 
2025-07-14 | PXD061454 | Pride
Chromatin-associated Phospho-peptides Mdm2 53bp1 
ProteomicsChromatin-associated proteome S. cerevisiae
Chromatin-associated and RNA-dependent Chromatin-associated proteome from S. cerevisiae, obtained by a new method yChEFs(yeast Chromatin Enriched Fractions)
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2019-07-17 | PXD009264 | Pride
Processing Rna Chromatin S. cerevisiae 
ProteomicsProteins associated with chromatin in Hela cells detected by LC-MS
Chromatin fraction was seperated from Hela cells. Proteins associated with chromatin was detected by LC-MS.
ORGANISM(S): Homo sapiens (Human) 
2024-11-15 | PXD053976 | Pride
Hela chromatin lc-ms 
UnknownA novel proteomics approach for the discovery of chromatin-associated protein networks.
Not available
S-EPMC2667365 | biostudies-literature
TranscriptomicsHeart-muscle expression ratios in pig obtained by 454-sequencing, iTRAQ-based proteomics and cDNA microarrays
The recent development within high-throughput technologies for expression profiling has allowed for parallel analysis of transcriptomes and proteomes in biological systems such as comparative analysis of transcript and protein levels of tissue regulated genes. Until now, such studies of have only in...
ORGANISM(S): Sus scrofa 
2009-01-22 | E-GEOD-10122 | biostudies-arrayexpress
ProteomicsYeast Multiplexed HyCCAPP
Bottom-up proteomics data from a study of proteins associated with yeast's ribosome biogenesis and stress response genes (four genomic loci: 25S rDNA, ARX1, CTT1 and RPL30), using multiplexed HyCCAPP (Hybridization Capture of Chromatin-Associated Protein for Proteomics). Data include spectra from 4 ...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2017-05-08 | MSV000081066 | MassIVE
UnknownAdaptation of Hybridization Capture of Chromatin-associated Proteins for Proteomics to Mammalian Cells.
Not available
S-EPMC6101452 | biostudies-literature
ProteomicsEnrichment of chromatin associated protein in mESC using LC-MS/MS
Mouse embryonic stem cells lysates were fractionated and separated by mechanical disruption follow by high salt gradient separation in order to obtain chromatin fractionation. Quantitative high mass accuracy mass spectrometry of the whole cell lysate and the chromatin fraction to asses the enrichme...
ORGANISM(S): Mus Musculus Domesticus (ncbitaxon:10092) 
MSV000084270 | MassIVE
ProteomicsFGF2 antiproliferative stimulus triggers proteomic and transcriptional changes associated with nucleolar disorganization in K-ras-driven mouse tumor cells (Chromatin MudPIT data)
Chromatin plays a crucial role in the intermediation between cell signaling and gene expression. The nucleolus is sensitive to stress and can orchestrate a chain of cellular events in response to stress signals. Despite being a growth factor, FGF2 has anti-proliferative and tumor-suppressive functio...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2022-10-11 | MSV000090511 | MassIVE
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