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ProteomicsBRAF interactome - Phospho-proteomic analyses of B-Raf protein complexes reveal new regulatory principles
SILAC-based analysis of BRAF interaction partners in DT40 chicken cells and mouse embryonic fibroblasts (MEF)
ORGANISM(S): Mus musculus (Mouse) Gallus gallus (Chicken) 
2016-07-13 | PXD003256 | Pride
Lc-ms/ms Affinity purification ms Silac Chicken Mouse Sorafenib 
ProteomicsThe inflammation repressor TNIP1 is degraded by selective autophagy in a LIR-dependent manner upon TLR3 activation
In the project « The inflammation repressor TNIP1 is degraded by selective autophagy in a LIR-dependent manner upon TLR3 activation » Jianwen Zhou, Nikoline Lander Rasmussen, Vyacheslav Akimov, Blagoy Blagoev, Trond Lamark, Terje Johansen and Jörn Dengjel performed MS-based proteomics to study the f...
ORGANISM(S): Homo sapiens (Human) 
2022-08-07 | PXD027163 | Pride
Lc-msms Inflammation Silac Human 
UnknownBacterial lectin BambL acts as a B cell superantigen.
Not available
S-EPMC8629787 | biostudies-literature
ProteomicsMouse Podocyte Proteome - ARP3 Controls the Podocyte Architecture at the Kidney Filtration Barrier
Label-free expression proteomics analysis of FACS-sorted mouse podocytes versus non-podocytes
ORGANISM(S): Mus musculus (Mouse) 
2018-12-14 | PXD010601 | Pride
Mouse Glomerulus Kidney Gfp Lc-ms/ms 
ProteomicsULK1 regulated phosphatases in mouse and human cells
In the project “ULK1 regulated phosphatases” by Zehan Hu, Devanarayanan Siva Sankar, Björn Stork and Jörn Dengjel two sets of bottom-up MS-based chemical proteomics experiments were performed in which phosphatase complexes were enriched based on their activity using microcystin-LR coupled sepharose ...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2021-11-03 | PXD022383 | Pride
Autophagy Mefs Chemical proteomics Silac A549 
UnknownPhospho-proteomic analyses of B-Raf protein complexes reveal new regulatory principles.
Not available
S-EPMC5042004 | biostudies-literature
TranscriptomicsTranscription profiling of human Awells B-lymphoblastoid cell line after 6 h and 24 h of starvation-induced autophagy
Assessment of mRNA expression changes in the B-lymphoblastoid cell line Awells after 6 h and 24 h of starvation-induced autophagy
ORGANISM(S): Homo sapiens 
2007-08-21 | E-GEOD-2435 | biostudies-arrayexpress
ProteomicsPhosphoproteomics of yeast strains undergoing nitrogen or phosphate starvation
In the project «Phosphoproteomics of yeast strains undergoing nitrogen or phosphate starvation» phosphoproteomics and expression proteomics were performed. In biological triplicates label-free quantification of different S. cerevisiae strains was performed. Five strains were used:(a) Ctrl WT, (b) WT...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-12-15 | PXD045932 | Pride
Nitrogen Lc-msms Yeast Starvation Phosphate Phosphoproteomics 
ProteomicsATG8 interactions in pexophagy conditions
In the project «ATG8 interactions in pexophagy conditions» anti-GFP affinity purifications (APs) of cells expressing (a) GFP as negative control, (b) GFP-GABARAP, (c) GFP-MAP1LC3B (LC3) were performed (each n=3 biol. replicates).
ORGANISM(S): Homo sapiens (Human) 
2026-09-14 | PXD048003 | Pride
Autophagy Gabarap Affinity purification Map1lc3b Lc-ms/ms 
ProteomicsULK1 on-bead in vitro kinase assay
Label-free phosphoproteomics of in vitro kinase assays. Three sets of bottom-up proteomics experiments were performed.
ORGANISM(S): Mus musculus (Mouse) 
2021-11-03 | PXD022759 | Pride
Mouse Lc-ms Phosphoproteomics 
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