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UnknownDepletion-dependent activity-based protein profiling using SWATH/DIA-MS detects serine hydrolase lipid remodeling in lung adenocarcinoma progression.
Not available
S-EPMC12117057 | biostudies-literature
ProteomicsSWATH-MS Analysis of Striatal Synaptic Mitochondria from Pink1 KO rats
This study investigates the proteomic alterations in striatal synaptic mitochondria isolated from 3-month-old wild-type and Pink1 KO rats using the SWATH-MS strategy. This dataset consists of 32 raw MS files, comprising 8 DIA (SWATH) and 24 DDA runs on a TripleTOF 5600 (SCIEX). Our findings revealed...
ORGANISM(S): Rattus norvegicus (Rat) 
2016-09-28 | PXD004558 | Pride
Swath-ms Mitochondria Parkinson's disease 
ProteomicsA comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS
A comprehensive and high-quality E. coli spectral assay library for 56,182 proteotypic peptides mapped to 4,014 (91.5%) of the 4,389 annotated proteins using one- and two-dimensional fractionated samples, and ion mobility separation.
ORGANISM(S): Escherichia coli 
2020-10-19 | PXD020761 | Pride
Dia-ms Spectral assay library E. coli 
ProteomicsSWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils
This study investigates the proteomic alterations in bone marrow neutrophils isolated from 5-8 week old Gfi1+/-, Gfi1K403R/-, Gfi1R412X/-, and Gfi1R412X/R412X mice using the SWATH-MS technique. This dataset consists of 26 raw MS files, comprising 13 DDA (for spectral library generation)and 13 DIA (f...
ORGANISM(S): Mus musculus (Mouse) 
2020-04-07 | PXD010943 | Pride
Scn Gfi1 Swath Neutrophil 
UnknownA comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.
Not available
S-EPMC7665006 | biostudies-literature
UnknownA comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS.
Not available
S-EPMC10575869 | biostudies-literature
UnknownData-Independent Acquisition for the Quantification and Identification of Metabolites in Plasma.
Not available
S-EPMC7766927 | biostudies-literature
UnknownImplementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas.
Not available
S-EPMC9197839 | biostudies-literature
ProteomicsLFQbench enables a multi-centered benchmark study demonstrating robust proteomic label-free quantification
The consistent and accurate quantification of proteins is a challenging task for mass spectrometry (MS)-based proteomics. SWATH-MS uses data-independent acquisition (DIA) for label-free quantification. Here we evaluated five software tools for processing SWATH-MS data: OpenSWATH, SWATH2.0, Skyline, ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2016-09-27 | PXD002952 | Pride
Lfqbench Lfq Swath-ms Benchmark 
ProteomicsActivity-based SWATH/DIA proteomic screen enables sensitive differential detection of serine hydrolases from surgically resected OCT-embedded primary lung adenocarcinoma
Lung malignancies are among the leading causes of cancer-related death in the modern world. While the disease is relatively manageable if caught at an early stage, the genomic variability and high level of mutations represent a daunting challenge for diagnosis, staging and prognostic classification....
ORGANISM(S): Homo sapiens (Human) 
2025-06-02 | PXD019357 | Pride
Abpp Lung adenocarcinoma tissue Swath-ms 
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