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MetabolomicsA novel micro-voltage driven fungal system for simultaneous removal of microplastics, antibiotics, and heavy metals

Microplastics, antibiotics, and heavy metals are co-occurring pollutants in wastewater, posing significant environmental risks and potential threats to human health. However, there is currently no effective wastewater treatment method for this type of combined pollution. This study establishes a ...

2026-01-05 | MTBLS13609 | MetaboLights
ProteomicsD2Ome - rate constant estimation from heavy water metabolic labeling and LC-MS
We developed a software for extraction of protein decay rate constants from heavy water labeling followed by LC-MS experiments. We illustrate the program on application to normal diet and western diet fed LDLR-/- mice. We demonstrate that proteins subunits of 40S ribosomal complex have reduced stabi...
ORGANISM(S): Mus musculus (Mouse) 
2019-04-10 | PXD009493 | Pride
Heavy water labeling Protein turnover Software 
TranscriptomicsHeavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network.
Background: The high number of heavy metal resistance genes in the soil bacterium Cupriavidus metallidurans CH34 makes it an interesting model organism to study microbial responses to heavy metals. Results: In this study the transcriptional response of this bacterium was measured after challenging i...
ORGANISM(S): Cupriavidus metallidurans CH34 
2011-06-28 | E-GEOD-23876 | biostudies-arrayexpress
ProteomicsAmino acid and heavy water labelling to obtain protein turnover rates in intact adult animals
Both labelling studies were conducted with C57/BL6J adult male mice, derived from the same supplier and maintained under identical conditions. Eleven adult male C57BL/6JOlaHsd mice (Harlan UK Ltd., Shardlow, UK) of over 12 months of age at the start of the experiment were housed individually in 48 x...
ORGANISM(S): Mus Musculus (mouse) 
2021-12-13 | PXD029639 | JPOST Repository
TranscriptomicsEarly and late response of Nematostella vectensis transcriptome to heavy metals
Environmental contamination from heavy metals poses a global concern for the marine environment, as heavy metals are passed up the food chain and persist in the environment long after the pollution source is contained. Cnidarians, dating back to 700 million years ago, play an important role in shapi...
ORGANISM(S): Nematostella vectensis 
2015-12-22 | E-GEOD-58769 | biostudies-arrayexpress
MetabolomicsMetabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights
ProteomicsHeavy water labeled murine liver LC-MS data
Heavy water labeled murine liver tissue LC-MS data
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2022-08-17 | MSV000090148 | MassIVE
TranscriptomicsTranscription profiling of wheat to identify genotypic differences in water soluble carbohydrate metabolism in stem
Water soluble carbohydrates (WSC, composed of mainly fructans, sucrose, glucose and fructose) deposited in wheat stems are important carbon sources for grain filling. Variation in stem WSC concentrations among wheat genotypes is one of the genetic factors influencing grain weight and yield under wat...
ORGANISM(S): Triticum aestivum 
2008-10-26 | E-GEOD-9767 | biostudies-arrayexpress
ProteomicsHuman serum proteome dynamics in type 2 diabetes using heavy water labeling mass spectrometry
Control subjects and type 2 diabetic patients were given deuterium-labeled (heavy) water for a seven-day period and their plasma serum proteins were analyzed by high-resolution mass spectrometry. Using an in-house-developed software, fractional synthesis rates were calculated for proteins of interes...
ORGANISM(S): Homo sapiens (Human) 
2017-11-02 | PXD005755 | Pride
Proteome dynamics Mass spectrometry Serum Type 2 diabetes Heavy water T2d Human 
ProteomicsTracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities using protein-based stable isotope probing proteomics (Protein-SIP)
This dataset was obtained from the authors of Starke et al. (2020, Journal of Proteomics 222: 103791, https://doi.org/10.1016/j.jprot.2020.103791). Sample labels: 1 - High fiber diet inoculum 2 - High protein diet inoculum 3,4,5 - High fiber + unlabeled water 6,7,8 - High protein + unlabeled water ...
ORGANISM(S): Bacteria 
2022-12-30 | PXD024291 | Pride
Deuterium Stable isotope probing 18o Protein-sip D2o Metaproteomics Lc-ms/ms Heavy water 2h Oxygen 18 H218o Stable isotope 1d-lc 
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