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Quantifying benthic bacterial activity under low oxygen using H218O stable isotope probing Raw sequence reads
Oxidized cysteine residues are highly reactive and can form functional covalent conjugates, of which the allosteric redox switch formed by the lysine-cysteine NOS bridge is an example. Here, we report a non-canonical FAD-dependent enzyme Orf1 that adds a glycine-derived N-formimidoyl group to glycin...
ORGANISM(S): Escherichia coli 
2023-05-10 | PXD041103 | Pride
This dataset was obtained from the authors of Starke et al. (2020, Journal of Proteomics 222: 103791, https://doi.org/10.1016/j.jprot.2020.103791). Sample labels: 1 - High fiber diet inoculum 2 - High protein diet inoculum 3,4,5 - High fiber + unlabeled water 6,7,8 - High protein + unlabeled water ...
ORGANISM(S): Bacteria 
2022-12-30 | PXD024291 | Pride
CD209L is a membrane glycoprotein with known glycan-binding properties and it also contains 2 N-glycosylation sequons at sites N92 and N361. Treatment with PNGase F in the presence of H218O, which removes N-linked glycans and isotopically labels the formerly-glycosylated site, confirmed that both un...
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD021309 | Pride
Genomics
Glucose and oxalic acid carbon-13 assimilation and H218O assimilation rates in forest surface soil bacteria
Alzheimer’s disease is characterized by the accumulation of protein aggregates. Dehydroamino acids are rarely observed posttranslational modifications that contain an electrophilic alkene capable of forming protein-protein crosslinks, which may lead to protein aggregation. We used mass spectrometry-...
ORGANISM(S): Homo sapiens (Human) 
2025-03-06 | PXD053814 | Pride
Genomics
H218O-RNA-DNA qSIP of soil microorganisms
We systematically explored the VUV photochemical reactions of aqueous halides Cl−, Br−, and I− with native proteins and peptides under the irradiation of a 10-ns single pulse of 193-nm ArF VUV laser
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) Mus musculus (Mouse) Equus caballus (Horse) 
2022-08-15 | PXD024795 | Pride
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