Huber C G CG - OmicsDI

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Unknown (46)
Transcriptomics (34)
Proteomics (9)
Metabolomics (3)
Genomics (1)

Organisms

Mus musculus (16)
Chlamydomonas reinhardtii (9)
Pseudomonas canadensis (9)
Marchantia polymorpha subsp. ruderalis (9)
Methylocystis sp. (9)
Exiguobacterium sp. SH31 (9)
Porites pukoensis (9)
Bothrops insularis (9)
Bothrops jararaca (9)
Bothrops jararacussu (9)
Bothrops cotiara (9)
Dinosauria (9)
Streptomyces coelicolor (9)
Pseudomonas taiwanensis (9)
Burkholderia ubonensis MSMB22 (9)
Pseudomonas aeruginosa PA103 (9)
Artibeus jamaicensis (9)
Morchella importuna (9)
Clostridium autoethanogenum (9)
Homo sapiens (5)
Arabidopsis thaliana (3)
Populus trichocarpa x Populus deltoides (2)
Escherichia coli (2)
Pinus contorta (1)
Picea sitchensis (1)
Streptomyces albus J1074 (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (35)
pride (9)
MetaboLights (3)

Tissue

Cell culture (4)
Pancreas (1)
Placenta (1)
Blood plasma (1)
Dendritic cell (1)
Whole body (1)
Blood (1)

Disease

Acute leukemia (2)
Not applicable (1)
Normal (1)
Allergy (1)
Pollen allergy (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (5)
Mass spectrometry (3)
Top-down proteomics (3)
All-ion fragmentation (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)

Instrument Platform

NextSeq 500 (3)
Illumina NovaSeq 6000 (2)
Exactive (Thermo Scientific) (2)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2011 (7)
2019 (5)
2025 (4)
2020 (4)
2015 (4)
2014 (4)
2016 (3)
2008 (3)
2023 (2)
2022 (2)
2012 (2)
2009 (2)
2024 (1)
2010 (1)
2021 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:7916 (2)
CHEBI:133179 (1)
CHEBI:145052 (1)
CHEBI:86910 (1)
CHEBI:84415 (1)
CHEBI:23774 (1)
CHEBI:73061 (1)
CHEBI:17553 (1)
CHEBI:16675 (1)
CHEBI:73074 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:68568 (1)
CHEBI:17858 (1)
CHEBI:16856 (1)
CHEBI:22653 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:16811 (1)
CHEBI:28300 (1)
CHEBI:16732 (1)
CHEBI:9300 (1)
CHEBI:17533 (1)
CHEBI:73026 (1)
CHEBI:17724 (1)
CHEBI:73685 (1)
CHEBI:17562 (1)
CHEBI:16870 (1)
CHEBI:16977 (1)
CHEBI:30832 (1)

Metabolite Name

Pantothenic acid (2)
L-Glutamic acid (2)
Methionine (2)
Proline (2)
L-Glutamine (2)
Cytidine (2)
2-Methylbutyrylcarnitine (1)
Acetyltaurine (1)
CDP-Ethanolamine (1)
3-[(4-hydroxyphenyl)methyl]-octahydropyrrolo[1,2-a]pyrazine-1,4-dione (1)
(4aS,5R,6S,8aS)-5-[(3E)-5-methoxy-3-methyl-5-oxopent-3-en-1-yl]-5,6,8a-trimethyl-3,4,4a,5,6,7,8,8a-octahydronaphthalene-1-carboxylic acid (1)
5-(tert-butyl)-2-methyl-N-(5-methyl-3-isoxazolyl)-3-furamide (1)
2-{1-[2-({6-[4-(tert-butyl)phenoxy]-3-pyridinyl}amino)-2-oxoethyl]cyclopentyl}acetic acid (1)
Dodecyl sulfate (1)
2-[(3S)-1-(Cyclohexylmethyl)-3-pyrrolidinyl]-5-fluoro-1H-benzimidazole (1)
Enalaprilat (1)
ADB-FUBICA (1)
DL-2-(acetylamino)-3-phenylpropanoic acid (1)
5-{5-[(2S)-1-(2,2-Dimethylpropyl)-2-pyrrolidinyl]-1,2,4-oxadiazol-3-yl}-2-(2-methoxyethoxy)pyridine (1)
1-[1-({(3R,4S)-3-[(5-Butyl-1,2-oxazol-3-yl)methyl]-4-piperidinyl}acetyl)-4-piperidinyl]-1,3-dihydro-2H-benzimidazol-2-one (1)
Lignoceric acid (1)
2-Oxindole (1)
2,5-di-tert-Butylhydroquinone (1)
4-Hydroxy-2-methylbenzoic acid (1)
15(R)-Prostaglandin D2 (1)
4a,7b-Dihydroxy-3-(hydroxymethyl)-9a-(isobutyryloxy)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-E]azulen-9-yl (2E)-2-methyl-2-butenoate (1)
(3beta,5xi,6alpha,9xi,12beta)-20-(beta-D-Glucopyranosyloxy)-3,12-dihydroxydammar-24-en-6-yl beta-D-glucopyranoside (1)
4-methyl-N-{[4-(5-propylpyrimidin-2-yl)-1,4-diazepan-1-yl]carbonyl}benzenesulfonamide (1)
10-HDA (1)
13Z,16Z-Docosadienoic Acid (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (8)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (10)
2024 (8)
2014 (7)
2011 (7)
2025 (6)
2023 (6)
2020 (6)
2012 (6)
2019 (5)
2016 (4)
2015 (3)
2008 (3)
2021 (3)
2009 (2)
2018 (2)
2010 (1)
2026 (1)
2013 (1)

Lab affiliation

Department of Biosciences, University of Salzburg (2)
1: Department of Molecular Biology, Division of Chemistry andBioanalytics, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria 2: Christian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria (2)
Department of Biosciences & Medical Biology, Paris Lodron University of Salzburg, Austria. (1)
University of Salzburg (1)
Bioanalytical Research Labs, Department of Biosciences, University of Salzburg (1)
University of Salzburg, Department of Molecular Biology, Division of Chemistry and Bioanalytics, Hellbrunnerstraße 34, 5020 Salzburg, Austria (1)
Department of Biosciences and Medical Biology, Paris-Lodron University Salzburg, 5020 Salzburg, Austria (1)

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Transcription profiling of Drosophila early embryos and unfertized eggs to analyze mRNA decay patterns in early development

Comparison of expression profiles in early Drosophila embryos and unfertilised eggs (collection intervals: 30-60 min, 90-120 min and 150-180 min after egg laying). A complete summary file containing normalized data with FLYBASE CG gene identifiers, gene symbols and classifications can be found in E-...

ORGANISM(S): Drosophila melanogaster

2011-02-11 | E-MEXP-2580 | biostudies-arrayexpress

Towards middle-up analysis of polyclonal antibodies: subclass-specific N-glycosylation profiling of murine immunoglobulin G (IgG) by means of HPLC-MS

Advanced analytical strategies including top-down and middle-up HPLC-MS approaches have become powerful alternatives to classical bottom-up analysis for the characterization of therapeutic monoclonal antibodies. Here, we assess feasibility of middle-up analysis of polyclonal IgGs posing additional c...

ORGANISM(S): Mus musculus (Mouse)

2020-10-26 | PXD014710 | Pride

Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry

Untargeted metabolomics aims at obtaining quantitative information on the highest possible number of low-molecular biomolecules present in a biological sample. Rather small changes in mass spectrometric spectrum acquisition parameters may have a significant influence on the detectabilities of metabo...

2016-06-09 | MTBLS233 | MetaboLights

Transcription profiling by array of HC11 mammary epithelial cell strains stably expressing different variants of the transcriptional regulator megakaryoblastic leukemia-1 (Mkl1)

We have previously shown that HC11 mammary epithelial cells react strongly to the overexpression of megakaryoblastic leukemia-1 (Mkl1) with induction of tenascin-C expression. The present study was designed to find genes co-regulated with tenascin-C by Mkl1 in a SAP domain-dependent manner and witho...

ORGANISM(S): Mus musculus

2014-02-06 | E-GEOD-44907 | biostudies-arrayexpress

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_Herbivory

From a set of 15 standard, normalized or full-length cDNA libraries, we generated 139 007 3'- or 5'-end sequenced ESTs, representing more than one-third of the c. 385 000 publicly available Populus ESTs. Clustering and assembly of 107 519 3'-end ESTs resulted in 14 451 contigs and 20 560 singletons,...

ORGANISM(S): Populus trichocarpa x Populus deltoides

2008-04-22 | E-GEOD-9522 | biostudies-arrayexpress

Towards middle-up analysis of polyclonal antibodies: subclass-specific N-glycosylation profiling of murine immunoglobulin G (IgG) by means of HPLC-MS.

Not available

S-EPMC7581757 | biostudies-literature

Dilute-and-Shoot Analysis of Therapeutic Monoclonal Antibody Variants in Fermentation Broth: A Method Capability Study

Monoclonal antibodies (mAbs) are widely applied as highly specific and efficient thera-peutic agents for various diseases, including cancer, inflammatory and autoimmune diseases. As protein production in cellular systems inherently generates a multitude of molecular variants, manufacturing of mAbs r...

ORGANISM(S): Homo sapiens (Human)

2019-11-12 | PXD011017 | Pride

Glycation Monoclonal antibodies Process analytical technology Electrospray ionization mass spectrometry Pat Glycosylation Biosimilar Mam Multiple attribute monitoring Antibody subunits Structural analysis Fermentation Process monitoring High-performance liquid chromatography

Rituximab-specific DNA aptamers are able to selectively recognize heat-treated antibodies.

Not available

S-EPMC7644011 | biostudies-literature

Multiomics assessment in Enchytraeus crypticus exposed to Ag (nano)materials (Ag NM300K and AgNO 3 )

Silver nanomaterials (AgNMs) are broadly used in many products and also rate among the most studied nanoscaled materials. Their ecotoxicological impact in soil invertebrates has been covered, mostly using standard testing, where endpoints like survival and reproduction are assessed. The underlying m...

ORGANISM(S): Enchytraeus crypticus

2021-09-10 | PXD024444 | Pride

Nanomaterial Lc-ms/ms E. crypticus Ag Ecotoxicology

Proteins and Molecular Pathways Relevant for Stemness Properties of Tumor-Initiating Pancreatic Cancer Stem Cells Recognized by Differential Proteome-, Gene Expression-, and Functional Analysis

Cancer stem cells (CSCs), a small subset of the tumor bulk with highly malignant properties, are deemed responsible for tumor initiation, growth, metastasis, and relapse. In order to reveal molecular markers and determinants of stemness properties, pancreatic CSCs were enriched in three-dimensional ...