Immunization - OmicsDI

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Unknown (14736)
Genomics (1063)
Transcriptomics (861)
Proteomics (151)
Other (30)
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Genomic (4)
Methylation profiling (3)

Organisms

Mus musculus (564)
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Gallus gallus (17)
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Mustela putorius furo (2)
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Mycobacterium tuberculosis variant bovis BCG (1)
Coccidioides posadasii (1)
Lates calcarifer (1)
Cavia porcellus (1)
Francisella tularensis subsp. novicida (1)
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Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
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Mycobacterium tuberculosis (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (530)
Homo sapiens (106)
Macaca mulatta (38)
Macaca fascicularis (7)
mouse gut metagenome (7)
Sus scrofa (5)
Rattus norvegicus (5)
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gut metagenome (3)
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Schistosoma mansoni (2)
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Mus (2)
Oncorhynchus mykiss (2)
Bordetella pertussis 137 (1)
Pneumocystis murina (1)
Ginglymostoma cirratum (1)
Brucella melitensis bv. 1 str. Rev.1 (1)
Burkholderia pseudomallei BPC006 (1)
Burkholderia pseudomallei K96243 (1)
Streptococcus thermophilus DGCC 7710 (1)
Chlorocebus aethiops (1)
Porphyromonas gingivalis ATCC 33277 (1)
recombinant coronavirus (1)
Clostridium tetani (1)

Repository

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biostudies-arrayexpress (520)
geo (468)
pride (58)
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GPMDB (1)
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PAXDB (1)

Tissue

Cell culture (10)
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Blood (2)
Blood (1)
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Disease

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Not Available (1)
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Waldenstroem's macroglobulinemia (1)
Autoimmune disease of central nervous system (1)
Tetanus (1)
Diphtheria (1)
Severe diarrhea (1)
Glaucoma (1)
Viral infectious disease (1)
Multiple sclerosis (1)
Tularemia (1)
Systemic lupus erythematosus (1)

Technology Type

Mass Spectrometry (59)
Shotgun proteomics (31)
Bottom-up proteomics (11)
Mass spectrometry (10)
Gel-based experiment (6)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (3)
SWATH MS (3)
Data-independent acquisition (3)
Top-down proteomics (2)
ESI (1)
Immunopeptidomics (1)
MSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (28)
NextSeq 500 (13)
Illumina HiSeq 2500 (8)
Illumina HiSeq 2000 (7)
Illumina MiSeq (5)
NextSeq 2000 (4)
NextSeq 550 (4)
ScanArray 5000 [PerkinElmer] (2)
- (2)
10X Chromium (2)
Agilent Tapestation 4200 (1)
Applied BiosystemsTM GeneChipTM Whole Transcript (WT) PLUS Reagent Kit User Guide (Thermo Fisher Scientific, Waltham, MA, USA). (1)
Applied BiosystemsTM GeneChipTM Clariom S human arrays (1)
PAXgene Blood RNA Kit (PreAnalytiX, Hombrechtikon, Switzerland). (1)
NEBNext Ultra II RNA Library Prep Kit (1)
NEBNext Globin and rRNA Depletion Kit (1)
PAXgene Blood RNA tubes (1)
Desktop Ubuntu 22 (1)
UCHC CAM HPC cluster (1)
Ambion RNA mirvanaâ¢Â extraction kit, Agilent 2100 Bioanalyzer, Nanodrop ND-1000 spectrophotometer (1)
Illumina HumanHT-12 V3.0 (1)
Illumina TotalPrep-96 RNA Amplification Kit (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Axon- GenePix4000B (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
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NA (1)
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Publication Date

2025 (114)
2013 (94)
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2024 (74)
2012 (72)
2014 (69)
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2015 (68)
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2021 (55)
2020 (51)
2010 (50)
2016 (49)
2017 (38)
2019 (34)
2008 (32)
2011 (30)
2018 (28)
2009 (24)
2006 (7)
2007 (5)
2005 (5)
2004 (1)

UNIPROT ID/AC

P08473 (1)
Q7VTM5_BORPE (1)
Q7VUH9_BORPE (1)
Q7VUX8_BORPE (1)
Q7VT90_BORPE (1)
Q7VZ34_BORPE (1)
Q7VXP9_BORPE (1)
APAG_BORPE (1)
Q7VUH8_BORPE (1)
Q7VVI7_BORPE (1)
Q7VSL7_BORPE (1)
Q7VSQ5_BORPE (1)
Q7VT25_BORPE (1)
Q7VYL9_BORPE (1)
Q7VZS4_BORPE (1)
Q7VUN3_BORPE (1)
Q7VZ29_BORPE (1)
Q7VYQ9_BORPE (1)
Q7VU40_BORPE (1)
LOLA_BORPE (1)
Q7VWL2_BORPE (1)
Q7VU86_BORPE (1)
Q7VXX1_BORPE (1)
Q7VU33_BORPE (1)
Q7VY16_BORPE (1)
Q7VY32_BORPE (1)
Q7VVJ6_BORPE (1)
Q7VS73_BORPE (1)
Q7VXA4_BORPE (1)
Q7VVI8_BORPE (1)

CHEBI ID

CHEBI:43580 (2)
CHEBI:16359 (2)
CHEBI:64645 (1)
CHEBI:141364 (1)
CHEBI:141362 (1)
CHEBI:75090 (1)
CHEBI:138394 (1)
CHEBI:131381 (1)
CHEBI:229268 (1)
CHEBI:62346 (1)
CHEBI:37714 (1)
CHEBI:42682 (1)
CHEBI:196466 (1)
CHEBI:140999 (1)
CHEBI:141366 (1)
CHEBI:18040 (1)
CHEBI:15670 (1)
CHEBI:37655 (1)
CHEBI:53455 (1)
CHEBI:83051 (1)
CHEBI:34485 (1)
CHEBI:49026 (1)
CHEBI:5445 (1)
CHEBI:71172 (1)
CHEBI:65136 (1)
CHEBI:37070 (1)
CHEBI:35045 (1)
CHEBI:16796 (1)
CHEBI:27637 (1)
CHEBI:16135 (1)

Metabolite Name

Myristoleic acid (3)
Linoleic acid (3)
Palmitic Acid (2)
Taurochenodeoxycholic acid (2)
Linoelaidic acid (2)
Myristelaidic acid (2)
Lactic acid (2)
Margaric acid (2)
Homovanillic acid (2)
Phthalic acid (2)
2-Hydroxyphenylacetic acid (2)
N-Acetylaspartic acid (2)
Gamma-Linolenic acid (2)
Chenodeoxycholic acid (2)
Anserine (2)
Ketoleucine (2)
Leucine (2)
Histidine (2)
Carnosine (2)
3,4-Dihydroxymandelic acid (2)
Benzoic acid (2)
Succinic acid (2)
Palmitoleic acid (2)
Taurocholic acid (2)
Phenylpyruvic acid (2)
Cholic acid (2)
Arachidonic acid (2)
Citric acid (2)
Pimelic acid (2)
Caproic acid (2)

First Public Date

2024 (149)
2025 (143)
2023 (120)
2026 (99)
2014 (87)
2022 (80)
2021 (76)
2020 (70)
2019 (51)
2017 (39)
2018 (30)
2015 (20)
2016 (13)
2013 (10)
2010 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Completed (2)
Active, not recruiting (1)
Terminated (1)
Not yet recruiting (1)

Lab affiliation

Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (3)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Molecular and Cellular Biology, University of Guelph, Canada (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid (1)
Institute of Marine & Environmental Technology (IMET), University of Maryland School of Medicine, 701 E. Pratt St, Baltimore MD21202, USA (1)
Cirad Bios UMR Intertryp, Campus international de Baillarguet TA A 17/G F-34398 Montpellier Cedex 5 France (1)
Institute for Research in Biomedicine (IRB), Barcelona Institute of Science and Technology (BIST), Barcelona 08028, Spain; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona 08010, Spain (1)
Laboratory of Regulatory Mechanisms in Immunity Institute of Carcinogenesis Federal State Budgetary Institution "N. N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation (1)
Department Biologie Professur für Mikrobiologie (1)
Pr group, BioMS, Biochemistry and Molecular Biology, University of Southern Denmark (1)
College of Life and Health Sciences, Northeastern University (1)
ICREA at ISGlobal Institute for Glbal Health, Hospital Clinic - Universitat de Barcelona, Barcelona, Spain and IGTP Institut d'Investigació Germans Trias i Pujol, Badalona, Spain (1)
Immune Regulation and Cancer, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Université de Lille - INSERM U1192 - Laboratoire PRISM (1)
Stanford University - Assistant Professor (1)
Division of Host-Microbe Systems & Therapeutics, Department of Pediatrics, UC San Diego School of Medicine, La Jolla, CA, USA. (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC) and CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain (1)
HZAU (1)
Wilmot Cancer Institute, University of Rochester Medical Center, 601 Elmwood Avenue, Box 704, Rochester, New York 14618, USA (1)
Assistant Professor, Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Research Center for Bioconvergence Analysis, 458 Korea Basic Science Institute, Ochang 28119, Korea Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology (KRICT), Daejeon 34114, Republic of Korea (1)
IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology,Kolkata, India (1)
Krefting Research Centre, Institute of Medicine, University of Gothenburg, Sweden (1)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain (1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium Department of Biomolecular Medicine, Ghent University, Ghent, Belgium (1)
Department of Microbiology and Immunology Faculty of Medicine Tel Aviv University Tel Aviv, Israel (1)
Dr. Zongmin Zhao. Assistant Professor, Department of Pharmaceutical Sciences, UIC Retzky College of Pharmacy, University of Illinois Chicago (1)

Keyword

Immunization (1)
Immunocompromised Host (1)
Immune Cells (1)
CV301 Vaccination (1)
Fowlpox (FP)-CV301 (1)
MVA-BN-CV301 (1)
MFOLFOX6 (1)
Heptavalent Pneumococcal Conjugate Vaccine (1)
Vaccines (1)
CEA-expressing malignancies (1)
Metastatic malignancies (1)
VRP Vaccine (1)
Alphavirus replicons (1)
Molecular therapeutics (1)
CEA (1)
Stage III colon cancer (1)
Nivolumab (1)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (2)
Manuscript Accepted (1)

Classification

bacteria (10)
helminths (2)
viruses (2)

Study type

Transcription profiling by array (338)
RNA-seq of coding RNA (52)
Proteomic profiling by array (32)
RNA-seq of coding RNA from single cells (30)
ChIP-seq (15)
Unknown experiment type (6)
Comparative genomic hybridization by array (4)
Other (4)
RNA-seq of total RNA (4)
Interventional (4)
ChIP-chip by tiling array (3)
Human - One-color microarray (3)
ChIP-chip by array (3)
Antigen profiling (3)
Methylation profiling by high throughput sequencing (3)
One-color microarray (2)
Human - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Methylation profiling by array (2)
Methyl-seq (1)
Animal - One-color microarray (1)
Animal - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Bisulfite-seq (1)
Observational (1)

Release Date

2022 (1921)
2023 (1647)
2021 (1471)
2024 (1325)
2025 (1269)
2020 (1088)
2019 (900)
2018 (831)
2017 (751)
2016 (651)
2015 (600)
2014 (575)
2013 (444)
2012 (344)
2010 (265)
2011 (261)
2009 (187)
2026 (168)
2008 (130)
2007 (89)
2006 (75)
2005 (63)
2003 (44)
2004 (34)
1999 (30)
1998 (26)
2000 (24)
2001 (19)
2002 (18)
1997 (6)

Location

United States (3)
Cuba (1)

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Metabolomic changes during active immunization with anti-METH vaccines.

Not available

ORGANISM(S): Rattus norvegicus

ST000456 | MetabolomicsWorkbench

Overcoming steric restrictions of VRC01 HIV-1 neutralizing antibodies through immunization

Broadly HIV-1 neutralizing VRC01-class antibodies target the CD4-binding site of Env. They are derived from VH1-2*02 antibody heavy chains paired with rare light chains expressing five amino acid long CDRL3s. They have been isolated from infected subjects but have not yet been elicited by immunizati...

ORGANISM(S): Human immunodeficiency virus 1 Homo sapiens

2020-05-26 | PXD015168 | Pride

Transcription profiling of S. aureus to investigate an outbreak of severe infections with community-acquired methicillin-resistant Staphylococcus aureus carrying the Panton-Valentine leukocidin following immunization - duplicate of E-BUGS-45

BACKGROUND: Infections with community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) are emerging worldwide. We investigated an outbreak of severe CA-MRSA infections in children following out-patient vaccination. METHODS AND FINDINGS: We carried out a field investigation after adve...

ORGANISM(S): Staphylococcus aureus

2009-01-16 | E-BUGS-45 | biostudies-arrayexpress

Immune repertoire after immunization as seen by next generation sequencing and proteomics

We study the repertoire of immunoglobulin sequences after immunization in a cohort of rats. Animals were immunized with dinitrophenol modified KLH or with recombinant human HuD. In the immune repertoire, and also in the matching proteomics data, we observe that the animals produce a repertoire that...

ORGANISM(S): Rattus norvegicus (Rat)

2017-10-04 | PXD006484 | Pride

Proteogenomics Ngs Mass spectrometry Immunization Immunoglobulins Immune repertoire

Pneumonia infection, lung and liver inflammation

Vaccination reduces morbidity and mortality from pneumonia but its effect on the tissue-level response to infection is still poorly understood. We evaluated pneumonia disease progression, acute phase response and lung gene expression profiles in mice inoculated intranasally with virulent gram-positi...

ORGANISM(S): Mus musculus

2013-03-29 | E-GEOD-45644 | biostudies-arrayexpress

Single-cell RNA and B cell receptor profiling of B cell response to SARS-CoV-2 vaccination

We generated single-cell transcriptomic and BCR sequencing data of B cells from peripheral blood samples taken from a SARS-CoV-2-antigen-naive cohort being vaccinated with the SARS-CoV-2 mRNA-1273 vaccine. Blood samples were collected at the baseline timepoint D-1 (i.e. one day prior to the initial ...

ORGANISM(S): Homo sapiens

2026-05-08 | E-MTAB-16531 | biostudies-arrayexpress

Nepal measles outbreak response immunization during COVID-19: A risk-based intervention strategy.

Not available

S-EPMC8882431 | biostudies-literature

Achieving immunization agenda 2030 coverage targets for 14 pathogens: Projected product and immunization delivery costs for 194 Countries, 2021-2030.

Not available

S-EPMC9850055 | biostudies-literature

Impact of the national hepatitis B immunization program in China: a modeling study.

Not available

S-EPMC9552421 | biostudies-literature

Gene expression profile after oral vaccination against infectious pancreatic necrosis virus (IPNV)

Oral immunization of trout against infectious pancreatic necrosis virus (IPNV) have been recently reported by using a DNA vector coding the viral capsid VP2 gene encapsulated in alginate microspheres. We report here an study of the transcripts in head kidney and pyloric ceca 7 days after oral vaccin...

ORGANISM(S): Oncorhynchus mykiss

2012-07-18 | E-GEOD-31591 | biostudies-arrayexpress

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