Labelfree analysis

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Proteomics (37)
Unknown (2)

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Andropogon gerardi (32)
Bacteria (32)
Canis lupus familiaris (32)
Cnidaria (32)
Cricetulus griseus (32)
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Fasciola (32)
Hepatitis B virus (32)
Human betaherpesvirus 5 (32)
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Mesocricetus auratus (32)
Miscanthus x giganteus (32)
Mus musculus (32)
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Orthoflavivirus (32)
Panicum virgatum (32)
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Pseudomonas aeruginosa AES-1R (32)
Rattus norvegicus (32)
Rattus rattus (32)
Rhodococcus jostii RHA1 (32)
Saccharomyces cerevisiae (32)
Severe acute respiratory syndrome coronavirus 2 (32)
Sorghastrum nutans (32)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (32)
Streptococcus pneumoniae (32)
Mus musculus (3)
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Shewanella oneidensis (1)

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pride (32)
iProX (5)

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Cell culture (7)
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Brain cancer (2)
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Glioblastoma (1)
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Legionellosis (1)
Proliferative diabetic retinopathy (1)
Severe acute respiratory syndrome (1)
Tularemia (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (18)
Affinity proteomics (4)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
SWATH MS (2)

Publication Date

2025 (8)
2022 (7)
2026 (4)
2024 (4)
2017 (3)
2018 (2)
2015 (2)
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2023 (1)
2019 (1)

Lab affiliation

German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (2)
Biology Of Intracellular Bacteria Unit, Institut Pasteur, Paris, France (1)
DIVAS (1)
DIVAS department of veterinary medicine and animal science (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Department of Cardiovascular Surgery & The Institute of Cardiovascular Diseases, TEDA International Cardiovascular Hospital, Tianjin University & Chinese Academy of Medical Sciences, Tianjin, 300457, China (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Ophthalmology, Shanghai General Hospital,Shanghai Jiao Tong University School of Medicine, National Clinical Research Center for Eye Diseases, Shanghai Key Laboratory of Ocular Fundus Diseases, Shanghai Engineering Center for Visual Science and Photomedicine, Shanghai engineering center for precise diagnosis and treatment of eye diseases (1)
Department of Veterinary Medicine and Animal Sciences (DIVAS) CRC Innovation for Well-Being and Environment (I-WE) University of Milan Via dell' Università, 6 - 26900 Lodi, Italy (1)
Dept. of Oncology-Pathology, Karolinska Institutet, SciLifeLab, Stockholm, Sweden (1)
Dipartimento di medicina veterinaria (1)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Mueller-Strasse 23 72076 Tuebingen Germany (1)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Institute of Biochemistry II, University Hospital, Goethe University, Frankfurt (1)
Institute of Molecular Medicine, Protein Research, Medical Faculty and University Hospital, Heinrich Heine University Düsseldorf, Düsseldorf, Germany (1)
John van Geest Cancer Research Centre, Nottingham Trent University, Nottingham NG11 8NS (1)
John van Geest Cancer Research Centre, Nottingham Trent University, UK (1)
KU Leuven - University of Leuven, Department of Neurosciences, Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), 3000 Leuven, Belgium VIB, Vesalius Research Center, Laboratory of Neurobiology, 3000 Leuven, Belgium (1)
Laboratoire d’Excellence GR-Ex, Paris, France 3P5 Proteom’IC facility, Université Paris Cité, Institut Cochin, INSERM, CNRS, F-75014 PARIS, France (1)
Laboratory for Systems Theory and Automatic Control, Institute for Automation Engineering (IFAT), Otto-von-Guericke University Magdeburg, 39106 Magdeburg, Germany (1)
MDC Berlin, Berlin, Germany (1)
MaP, Marseille Proteomique Centre de Recherche en Cancérologie de Marseille INSERM U1068/Institut Paoli-Calmettes 27, Bd Leï Roure, BP30059, 13273 Marseille CEDEX 9, France (1)
Molecular Proteomics Laboratory Biological-Medical Research Center Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf Germany (1)
Necker proteomic platform, , PPN-3P5, Structure Federative de Recherche Necker, INSERM US24, (1)
Proteome Research AG Stühler Institute of Molecular Medicine I Heinrich Heine University Düsseldorf 40225 Düsseldorf (1)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University (1)
School of Medicine, UCD, Dublin, Ireland (1)
Shanghai Jiao Tong University (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo University, Ningbo, Zhejiang 315211, China (1)
Suneel Apte lab, Biomedical engineering department, Learner research institute Cleveland Clinic (1)

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Proteomics identification of CsrA-regulated proteins in Legionella pneumophila

The carbon storage regulator protein CsrA regulates cellular processes post-transcriptionally by binding to target-RNAs altering translation efficiency and/or their stability. In this dataset we identified proteins regulated by CsrA in the human bacterial pathogen Legionella pneumophila by labelfree...

ORGANISM(S): Legionella pneumophila str. Paris

2017-02-13 | PXD004730 | Pride

Effect of TgPP2C-hn on Hela protein expression and phosphorylation modification analysis of phosphorylated 4D-Labelfree

In order to explore the effect of TgPP2C-hn on the expression level and phosphorylation modification of Hela protein, we compared the difference of protein expression and phosphorylation modification between the experimental group and the control group. The new generation ion mobility mass spectrome...

ORGANISM(S): Homo Sapiens

PXD052201 |

Protein profile analysis of 12 human vitreous samples using labelfree method

To study the differences in protein profiles before and after intravitreal ranibizumab (IVR) treatment, 12 vitreous humor (VH) samples were collected from 6 proliferative diabetic retinopathy (PDR) patients before (pre group) and after IVR treatment (post group). LC–MS/MS and bioinformatics analysis...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD027592 | Pride

Proliferative diabetic retinopathy proteomics ranibizumab label-free lc–ms/ms prm

11 human cell lines - Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

Re-submission of raw data from Geiger T et. al., Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol Cell Proteomics. 2012 Mar;11(3):M111.014050. doi: 10.1074/mcp.M111.014050. Epub 2012 Jan 25.

ORGANISM(S): Homo sapiens (Human)

2015-07-21 | PXD002395 | Pride

Deep proteome Human

Proteomic analysis of plasma exosomes to differentiate malignant from benign pulmonary nodules.

Not available

S-EPMC6359787 | biostudies-literature

Proteomics study of right atrium in patients with atrial fibrillation after coronary artery bypass grafting

We performed 4D-labelfree quantitative proteomics analysis of right atrial appendage tissues from 5 patients with atrial fibrillation (AF) and 5 patients with sinus rhythm (SR) after CABG. A total of 2179,559 spectrums and 48,047 peptides were detected by mass spectrometry. Further, we identified 50...

ORGANISM(S): Homo sapiens (Human)

2025-08-11 | PXD059685 | Pride

Proteomics Right atrial appendage Atrial fibrillation

Viewing life without labels under optical microscopes.

Not available

S-EPMC10212946 | biostudies-literature

Proteomic analysis neutrophils from COVID-19 patients

To go further insight into the involvement of neutrophils in COVID-19 clinical expression, we performed a proteomic analysis of this blood cell type in COVID-19 patients and two non-infected SARS-CoV-2 control groups composed of healthy subjects and ARDS patients hospitalized in intensive care unit ...

ORGANISM(S): Homo sapiens (Human)

2022-07-27 | PXD033293 | Pride

Tims-tof Neutrophil Covid-19 Labelfree

Diabetic myocardial ischemia-reperfusion injury

Proteomic analysis of protein expression changes in the hearts of diabetes-accelerated myocardial ischemia/reperfusion injury mice induced by USP48 overexpression using 4D-LabelFree technology.

ORGANISM(S): Mus Musculus

PXD063868 |

Labelfree proteomics in Extracellular vesicles from human microglia cells

Label-free proteomics is used to study the role of the intracellular sorting receptor SORLA in the formation of functional exosomes by iPSC-derived human microglia.

ORGANISM(S): Homo sapiens (Human)

2025-09-11 | PXD064297 | Pride

Lc-msms Extracellular vesicles Sorla

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