Labelfree shotgun proteomics

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Proteomics (23)

Organisms

Andropogon gerardi (23)
Bacteria (23)
Canis lupus familiaris (23)
Cnidaria (23)
Cricetulus griseus (23)
Eukaryota (23)
Fasciola (23)
Hepatitis B virus (23)
Human betaherpesvirus 5 (23)
Madurella mycetomatis (23)
Mesocricetus auratus (23)
Miscanthus x giganteus (23)
Mus musculus (23)
Mycobacterium tuberculosis (23)
Orthoflavivirus (23)
Panicum virgatum (23)
Penium margaritaceum (23)
Platyhelminthes (23)
Pseudomonas aeruginosa AES-1R (23)
Rattus norvegicus (23)
Rattus rattus (23)
Rhodococcus jostii RHA1 (23)
Saccharomyces cerevisiae (23)
Severe acute respiratory syndrome coronavirus 2 (23)
Sorghastrum nutans (23)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (23)
Streptococcus pneumoniae (23)
Streptomyces coelicolor A3(2) (23)
Toxoplasma gondii (23)
Tripsacum dactyloides (23)

Repository

pride (23)

Tissue

Blood (2)
Brain (2)
Cell culture (2)
Hepatocyte (2)
Cardiocyte differentiation (1)
Cell line cell (1)
Epithelial cell (1)
Erythrocyte (1)
Eye (1)
H9c2 cell (1)
HeLa cell (1)
Heart (1)
JURKAT cell (1)
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Liver (1)
Mesenchymal cell (1)
Mucus (1)
Neutrophil (1)
Permanent cell line cell (1)
Primary cell (1)
T cell (1)
Thallus (1)
Vitreous humor (1)

Disease

Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Cervix carcinoma (1)
Colon cancer (1)
Glioblastoma (1)
Legionellosis (1)
Polycythemia vera (1)
Proliferative diabetic retinopathy (1)
Severe acute respiratory syndrome (1)
Tularemia (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (1)

Publication Date

2022 (7)
2024 (3)
2017 (3)
2023 (2)
2020 (2)
2018 (2)
2015 (2)
2026 (1)
2021 (1)

Lab affiliation

Mikrobielle Proteomik, Helmholtzzentrum für Infektionsforschung, Braunschweig, Germany Institut für Mikrobiologie, Technische Universität Braunschweig, Germany (2)
Biology Of Intracellular Bacteria Unit, Institut Pasteur, Paris, France (1)
DIVAS (1)
DIVAS department of veterinary medicine and animal science (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Ophthalmology, Shanghai General Hospital,Shanghai Jiao Tong University School of Medicine, National Clinical Research Center for Eye Diseases, Shanghai Key Laboratory of Ocular Fundus Diseases, Shanghai Engineering Center for Visual Science and Photomedicine, Shanghai engineering center for precise diagnosis and treatment of eye diseases (1)
Department of Veterinary Medicine and Animal Sciences (DIVAS) CRC Innovation for Well-Being and Environment (I-WE) University of Milan Via dell' Università, 6 - 26900 Lodi, Italy (1)
Dept. of Oncology-Pathology, Karolinska Institutet, SciLifeLab, Stockholm, Sweden (1)
Dipartimento di medicina veterinaria (1)
Institut National de la Transfusion Sanguine, Laboratoire d’Excellence GR-Ex, F-75015 Paris, France (1)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Institute of Molecular Medicine, Protein Research, Medical Faculty and University Hospital, Heinrich Heine University Düsseldorf, Düsseldorf, Germany (1)
KU Leuven - University of Leuven, Department of Neurosciences, Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), 3000 Leuven, Belgium VIB, Vesalius Research Center, Laboratory of Neurobiology, 3000 Leuven, Belgium (1)
Laboratoire d’Excellence GR-Ex, Paris, France 3P5 Proteom’IC facility, Université Paris Cité, Institut Cochin, INSERM, CNRS, F-75014 PARIS, France (1)
Laboratory for Systems Theory and Automatic Control, Institute for Automation Engineering (IFAT), Otto-von-Guericke University Magdeburg, 39106 Magdeburg, Germany (1)
MDC Berlin, Berlin, Germany (1)
MaP, Marseille Proteomique Centre de Recherche en Cancérologie de Marseille INSERM U1068/Institut Paoli-Calmettes 27, Bd Leï Roure, BP30059, 13273 Marseille CEDEX 9, France (1)
Molecular Proteomics Laboratory, Heinrich Heine University Düsseldorf, Düsseldorf, GermanyMolecular Proteomics Laboratory, Heinrich Heine University Düsseldorf, Düsseldorf, Germany (1)
Necker proteomic platform, , PPN-3P5, Structure Federative de Recherche Necker, INSERM US24, (1)
Proteome Research AG Stühler Institute of Molecular Medicine I Heinrich Heine University Düsseldorf 40225 Düsseldorf (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo University, Ningbo, Zhejiang 315211, China (1)
Suneel Apte lab, Biomedical engineering department, Learner research institute Cleveland Clinic (1)

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Proteomics identification of CsrA-regulated proteins in Legionella pneumophila

The carbon storage regulator protein CsrA regulates cellular processes post-transcriptionally by binding to target-RNAs altering translation efficiency and/or their stability. In this dataset we identified proteins regulated by CsrA in the human bacterial pathogen Legionella pneumophila by labelfree...

ORGANISM(S): Legionella pneumophila str. Paris

2017-02-13 | PXD004730 | Pride

Proteomics identification of regulated proteins during cardyomyocyte differentiation

The rat cardio-myoblast cell line H9C2 has emerged as an important tool for studying cardiac development and toxicology. We present here a rigorous proteomic analysis that for the first time studied changes of proteins during H9C2 differentiation into cardiomyocyte-like cells over time. Quantitative...

ORGANISM(S): Rattus norvegicus (Rat)

2018-11-07 | PXD006115 | Pride

Rattus norvegicus Labelfree shotgun proteomics Cardiac development H9c2 cells

11 human cell lines - Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

Re-submission of raw data from Geiger T et. al., Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol Cell Proteomics. 2012 Mar;11(3):M111.014050. doi: 10.1074/mcp.M111.014050. Epub 2012 Jan 25.

ORGANISM(S): Homo sapiens (Human)

2015-07-21 | PXD002395 | Pride

Deep proteome Human

Importance of arginine trasporter ArgP in Francisella by comparative proteomics.

Metabolic adaptation has recently been recognized as a key component of the intracellular life cycle of pathogenic microorganisms. Upon entry into mammalian host cells, Francisella tularensis, a pathogenic bacterium responsible for the zoonotic disease tularemia, rapidly escapes from the phagosome t...

ORGANISM(S): Francisella tularensis subsp. novicida (strain U112)

2015-01-28 | PXD001584 | Pride

Q exactive plus F. tularensis Labelfree Arginine transporter

Mesenchymal stem cell secretome

Adult neural stem cells (aNSCs) show multilineage differentiation potential influenced by intrinsic and extrinsic signaling cues. We and others have shown that stimulation of aNSCs with bone marrow mesenchymal stem cell (MSC) secreted factors substantially enhances in vitro oligodendrogenesis at an ...

ORGANISM(S): Rattus norvegicus (Rat)

2020-06-18 | PXD018231 | Pride

Glial cell fate Transplantation Neural stem cell Mesenchymal stem cell Proteome Secretome Spinal cord

Protein profile analysis of 12 human vitreous samples using labelfree method

To study the differences in protein profiles before and after intravitreal ranibizumab (IVR) treatment, 12 vitreous humor (VH) samples were collected from 6 proliferative diabetic retinopathy (PDR) patients before (pre group) and after IVR treatment (post group). LC–MS/MS and bioinformatics analysis...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD027592 | Pride

Proliferative diabetic retinopathy proteomics ranibizumab label-free lc–ms/ms prm

Identification of CD24 interaction partners in urologic tumor cell lines

Being involved in adhesion, migration, and invasion, the highly glycosylated signal transducer CD24 (cluster of differentiation 24) has been implicated to play an essential role during carcinogenesis. Previously, the molecular and (epi)genetic regulation of CD24 has been characterized in testicular ...

ORGANISM(S): Homo sapiens (Human)

2023-05-10 | PXD039063 | Pride

Germ cell tumor Cd24 Urothelial carcinoma Renal cell carcinoma Co-immunoprecipitation Prostate cancer

Phase separation of C9orf72 dipeptide repeats perturbs stress granule metabolism

Liquid-liquid phase separation (LLPS) of RNA binding proteins underlies the formation of multiple membraneless organelles involved in RNA metabolism, including stress granules. Defects in stress granule homeostasis constitute a corner stone of ALS/FTLD pathogenesis. Phase separation of ALS-linked st...

ORGANISM(S): Homo sapiens (Human)

2017-04-26 | PXD005509 | Pride

Stress granules Labelfree shotgun proteomics Arginine-rich dipeptide repeats Liquid-liquid phase separation

Label-free and targeted mass tandem (TMT-labelled) global proteomic analyses on mucus from the stomach, small and large intestine of pigLabel-free and targeted mass tandem (TMT-labelled) global proteomic analyses on mucus from the stomach, small and large intestine of pig

The gastrointestinal mucus is a hydrogel that lines the luminal side of the gastrointestinal epithelium, offering barrier protection from pathogens and lubrication of the intraluminal contents. These barrier properties likewise affect nutrients and drugs that need to penetrate the mucus to reach the...

ORGANISM(S): Sus scrofa (Pig)

2022-03-07 | PXD029371 | Pride

Gastrointestinal Mucus Composition Healthy Porcine Pig

Proteome analysis of HepG2 WT and mitochondrial apolipoprotein MIC26 knockout cells under normo- and hyperglycemic conditions

Increased amounts of the mitochondrial apolipoprotein O /MIC26 were found in diabetic patients along with lipid accumulation in murine liver upon MIC26 expression. MIC26 is a MICOS complex constituent present in the mitochondrial inner membrane. Here, we employed a proteomics analysis approach in W...

ORGANISM(S): Homo sapiens (Human)

2024-09-13 | PXD047246 | Pride

Apolipoproteins Mic26 Mitochondria Micos complex and fatty acid metabolism

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