Manual evaluation

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Unknown (2328)
Transcriptomics (254)
Proteomics (61)
Metabolomics (35)
Genomics (27)
Genomic (5)
Models (3)
Other (3)
Clinical (2)

Organisms

Homo sapiens (153)
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human gut metagenome (1)
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Ctenopharyngodon idella (1)

Organisms

Homo sapiens (11)
Mus musculus (3)
Xenopus laevis (1)
Equus caballus (1)

Repository

biostudies-arrayexpress (250)
pride (57)
MetaboLights (35)
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geo (8)
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Tissue

Cell culture (12)
Brain (7)
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Heart (3)
Blood plasma (3)
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Urine (2)
Bone marrow (2)
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Chloronema (1)
Rectum (1)
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Pancreatic islet cell (1)
Duodenum (1)
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HCT-116 cell (1)
Type B pancreatic cell (1)
Protonema (1)
Breast epithelium (1)
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Small intestine (1)
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Breast (1)
Gall bladder (1)

Disease

Schizophrenia (2)
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Duchenne muscular dystrophy (1)
Mixed disorder as reaction to stress (1)
Neuroblastoma (1)
Cervix carcinoma (1)
Mild cognitive impairment (1)
COVID-19 (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (57)
Mass spectrometry (25)
Shotgun proteomics (22)
Bottom-up proteomics (11)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
NMR spectroscopy (7)
SRM/MRM (6)
SWATH MS (5)
Data-independent acquisition (5)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry imaging (2)
Data-dependent acquisition (2)
NMR spectroscopy assay (1)
HDMSE (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Illumina HiSeq 2000 (7)
Liquid Chromatography MS - negative - reverse phase (6)
ArrayWoRx Biochip Reader [Applied Precision] (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (4)
Nuclear Magnetic Resonance (NMR) - (4)
NextSeq 500 (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
GC-MS (3)
454 GS FLX+ (2)
Illumina HiSeq 2500 (2)
Q Exactive (2)
Bruker (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - hilic (2)
See Description (1)
See Desciption (1)
Manual labeling (1)
Manual extraction (1)
Clinical procedure using endoscopic equimpent (1)
Ilumina HiScan H166 (1)
Illumina iScan (1)
GenePix 4000B [Axon Instruments] (1)
HiSeq X Ten (1)
Illumina NovaSeq 6000 (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
Orbitrap Exploris 480 (1)
TimsTOF Pro 2 (1)

Publication Date

2011 (37)
2010 (37)
2014 (33)
2015 (30)
2012 (25)
2013 (24)
2009 (17)
2025 (17)
2016 (16)
2008 (15)
2021 (13)
2019 (13)
2026 (12)
2022 (12)
2023 (11)
2024 (9)
2020 (8)
2007 (8)
2018 (7)
2017 (5)
2006 (4)
2004 (2)
2005 (1)
2003 (1)

UNIPROT ID/AC

R0020C (1)
Q01532 (1)
P38431-2 (1)
P21269-3 (1)
P07263-2 (1)
P06208-2 (1)

CHEBI ID

CHEBI:16857 (13)
CHEBI:17203 (13)
CHEBI:16015 (13)
CHEBI:17053 (12)
CHEBI:15354 (12)
CHEBI:15428 (12)
CHEBI:15741 (12)
CHEBI:16919 (12)
CHEBI:17115 (11)
CHEBI:17295 (11)
CHEBI:16467 (11)
CHEBI:18012 (11)
CHEBI:16977 (10)
CHEBI:15971 (10)
CHEBI:15891 (10)
CHEBI:17268 (10)
CHEBI:16335 (10)
CHEBI:32816 (10)
CHEBI:16449 (10)
CHEBI:16737 (10)
CHEBI:17895 (9)
CHEBI:18050 (9)
CHEBI:17196 (9)
CHEBI:18019 (9)
CHEBI:17750 (9)
CHEBI:27897 (9)
CHEBI:17368 (9)
CHEBI:24898 (9)
CHEBI:15724 (8)
CHEBI:16610 (8)

Metabolite Name

Creatine (7)
Creatinine (6)
Taurine (6)
L-Phenylalanine (6)
L-alanine (5)
L-asparagine (5)
Glycerophosphoglycerol (5)
L-proline (5)
L-threonine (5)
L-glutamic acid (5)
Glycine (5)
L-Proline (5)
Choline (5)
L-Glutamine (5)
L-Glutamic acid (5)
L-Alanine (5)
L-Serine (5)
L-histidine (4)
L-glutamine (4)
L-aspartic acid (4)
Spermidine (4)
Sucrose (4)
4-hydroxybenzoic acid (4)
Myo-inositol (4)
Betaine (4)
L-Ornithine (4)
L-lysine (4)
L-Tyrosine (4)
L-serine (4)
Creatine (4)

First Public Date

2025 (4)
2024 (4)
2023 (3)
2022 (3)
2016 (3)
2015 (3)
2026 (1)
2021 (1)
2019 (1)
2018 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Not provided (1)
Completed (1)

Lab affiliation

Biognosys AG (4)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (2)
Eppley Institute University of Nebraska Medical Center USA (1)
The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 Hospital), (1)
Eppley Institute, University of Nebraska Medical Center, United States (1)
Eppley Institute University of Nebraska Medical Center Omaha, Nebraska, USA (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Protein Analytics Lab, Department of Cellular Biochemistry, University Medical Center Göttingen, Germany (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark. (1)
UCL Biological Mass Spectrometry Lab Head GOSH University College London London Tel +44(0)7809621264 (1)
School of Biosciences, Parkville, VIC 3010, Melbourne, Australia (1)
Univ.-Prof. Dr., University of Vienna, Max Perutz Labs, Vienna Biocenter Campus (VBC) (1)
Eppley Institute University of Nebraska Medical School USA (1)
College of Life and Health Sciences, Northeastern University, Shenyang, China (1)
Laboratory of proteomic analysis, FSBIS SRI of Physical-Chemical Medicine FMBA of Russia (1)
INRAE, UR1268 BIA, F-44316 Nantes, France (1)
AIBN, University of Queensland (1)
Department of Laboratory Medicine, Sahlgrenska academy, University of Gothenburg, Gothenburg, Sweden (1)
Institute for Microbiology, Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (1)
Gene Center Munich Ludwig-Maximilians-Universität Munich (LMU) Feodor-Lynen-Str. 25 81377 Munich Germany (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Munich, Germany (1)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (1)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, 02-106 Warsaw, Poland. (1)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (1)
Department of Biology, Massachusetts Institute of Technology, Building 68, 31 Ames St., Cambridge, MA 02139 Howard Hughes Medical Institute, Chevy Chase, MD (1)
Copenhagen Center for Glycomics, University of Copenhagen (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138 (1)
Hormones & Cancer Group, Kolling Institute, University of Sydney, Sydney 2065, Australia (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic (1)
Max Planck Institute of Biophysics, Frankfurt, Germany (1)

Keyword

Peritoneal Metastasis (1)
IDEAL (1)
PCI (1)
CRPM (1)
Colorectal Peritoneal Metastasis (1)
Colorectal (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Study type

Transcription profiling by array (210)
RNA-seq of coding RNA (16)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (5)
Transcription profiling by RT-PCR (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Genotyping by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Observational (1)
Interventional (1)

Release Date

2025 (377)
2022 (308)
2023 (293)
2024 (290)
2021 (253)
2020 (169)
2019 (147)
2018 (112)
2017 (84)
2014 (74)
2016 (73)
2015 (65)
2026 (60)
2011 (53)
2013 (51)
2010 (51)
2012 (43)
2008 (23)
2009 (18)
2007 (14)
2006 (9)
2004 (6)
2005 (2)
2003 (2)
2001 (1)

Location

New Zealand (1)

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Evaluation of extraction solvents for untargeted metabolomics analysis of enrichment reactor cultures performing enhanced biological phosphorus removal (EBPR)

INTRODUCTION: The extraction solvent mixtures were optimized for untargeted metabolomics analysis of microbial communities from two laboratory scale activated sludge reactors performing enhanced biological phosphorus removal (EBPR).

OBJECTIVE: To develop a ...

2019-08-16 | MTBLS884 | MetaboLights

Manual therapy improves fibromyalgia symptoms by downregulating SIK1

PRJNA1145016 | ENA

Mass spectrometry distinguishes putrescine, spermidine, and spermine covalently attached to proteins

Bacterial and mammalian cells are rich in putrescine, spermidine and spermine. Polyamines can be incorporated into proteins in vitro. Very few naturally occurring polyaminated proteins have been identified. Bovine albumin and the recombinant universal stress protein from Francisella tularensis we...

ORGANISM(S): Bos taurus (Bovine)

2024-02-27 | PXD046396 | Pride

Homo sapiens

Evaluation of Manual and Automatic prepared HeliScopeCAGE cDNA

PRJDB2160 | ENA

Somatostatin receptor immunohistochemistry in neuroendocrine tumors: comparison between manual and automated evaluation.

Not available

S-EPMC4152058 | biostudies-literature

RNA quality and the influence on gene expression

We created RNA with different degree of degradation and investigated if the RNA quality influenced gene expression We used oligo-cDNA-microarrays to compare gene expressions Keywords: RNA quality, breast cancer, gene expression Six breast cancer samples were used, each sample were divided in four an...

ORGANISM(S): Homo sapiens

2007-10-04 | E-GEOD-9219 | biostudies-arrayexpress

Comparison of computer-aided and manual measurements in the evaluation of carpal alignment.

Not available

S-EPMC11382436 | biostudies-literature

Dichlorvos-induced formation of isopeptide crosslinks between proteins in SH-SY5Y cells

Chlorpyrifos oxon catalyzes the crosslinking of proteins via an isopeptide bond between lysine and glutamic acid or aspartic acid in studies with purified proteins. Our goal was to determine the crosslinking activity of the organophosphorus pesticide, dichlorvos. We developed a protocol for examini...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD033593 | Pride

Shsy5y human neuroblastoma cells Dichlorvos Mass spectrometry Manual evaluation Protein prospector Crosslink Isopeptide Crosslinks

Tumor Response Evaluation Using iRECIST: Feasibility and Reliability of Manual Versus Software-Assisted Assessments.

Not available

S-EPMC10931003 | biostudies-literature

Manual therapy and exercise for adhesive capsulitis: a systematic review with meta-analysis.

Not available

S-EPMC10566414 | biostudies-literature

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2718 Results

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