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ProteomicsThe circadian clock components BMAL1 and Rev-Erb regulate flavivirus replication
detection and qunatitation of proteins by mass spectromerty to see the effect of drug treatment in human cell lines.
ORGANISM(S): Homo sapiens (Human) 
2019-11-12 | PXD011721 | Pride
Dda Prm 
UnknownMStractor: R Workflow Package for Enhancing Metabolomics Data Pre-Processing and Visualization.
Not available
S-EPMC8398219 | biostudies-literature
ProteomicsFeedback regulation in EGFR signaling involves IRF2BP proteins and temporal control by (de)SUMOylation
Molecular switches are essential modules in signaling networks by enabling a quick response to environmental changes. Here, we describe a role for small ubiquitin-like-modifier SUMO as a molecular switch in epidermal growth factor receptor (EGFR) signaling. Using quantitative mass spectrometry, we c...
ORGANISM(S): Homo sapiens (Human) 
2021-04-13 | PXD018049 | Pride
Irf2bp1 Dusp1 Transcription Irf2bp2 Egf Feedback inhibitor Egfr Sumo Regulation 
ProteomicsXL-MS data analysis with MeroX and XlinkX
Comparison of MeroX in different modes and XlinkX upon variation of database size based on DSBU linked BSA as test-dataset
ORGANISM(S): Bos taurus (Bovine) 
2020-11-17 | PXD021648 | Pride
Mass-spectromerty Dsbu Xlinkx Merox Crosslinking Bsa 
ProteomicsProteins associated wth Trypanosoma brucei HNRNPF/H
We aimed to find proteins associated with HNRNPH in bloodstream-form _Trypanosoma brucei_. We integrated a sequence encoding a cleavable TAP (Tandem Affinity Purification) tag into the genome upstream of, and in frame with, one _HNRNPH_ gene. The other allele was deleted. TAP-HNRNPH was purifed fro...
ORGANISM(S): Trypanosoma brucei 
2022-10-15 | PXD037289 | Pride
Trypanosoma brucei  mrna  rna-binding protein  trans splicing  mrna decay 
ProteomicsIdentification of SENP6 targets in HeLa cells by SENP6 SiRNA and MW shift analysis
The SUMO protease SENP6 disassembles SUMO chains and thus SENP6 depletion should lead to the extension of SUMO polymers on substrates. We have used a proteomic method to identify putative SENP6 substrates based on increased apparent molecular weight after SENP6 depletion. This method uses SDS-PAGE f...
ORGANISM(S): Homo sapiens (Human) 
2024-03-01 | PXD036743 | Pride
Sumo senp6 molecular weight 
ProteomicsATG7KO SILAC Secretome_Proteome
human lung fibroblasts WT and ATG7KO (two clones) were used for unbiased SILAC/AHA-based secretome and proteome measurements.
ORGANISM(S): Homo sapiens (Human) 
2021-09-10 | PXD025001 | Pride
Autophagy Atg7ko Silac Lung fibroblasts wi26 
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