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ProteomicsAncient proteins resolve the evolutionary history of Darwin's South American ungulates
The project aimed to characterize the collagen type I (COL1) sequences from Pleistocene Macrauchenia sp. and Toxodon sp. bone samples, and by comparison with existing COL1 sequences available from genomic sources establish the phylogenetic position of both extinct species. In order to resolve their ...
ORGANISM(S): unidentified Equus Orycteropus afer (Aardvark) Cyclopes didactylus (Silky anteater) (Myrmecophaga didactyla) Hippopotamus amphibius (Hippopotamus) Tapirus terrestris (Lowland tapir) (Brazilian tapir) Mylodon darwinii (Giant ground sloth) 
2015-03-19 | PXD001411 | Pride
Lc-ms/ms Macrauchenia Toxodon Bruker maxis hd De novo collagen sequencing Pleistocene Thermo scientific hybrid quadrupole-orbitrap 
ProteomicsTop-Down proteomics of unfractionated Bovine heart mitochondria
Top-Down proteomics pilot experiment of unfractionated Bovine Heart Mitochondria (BHM) using ultra high resolution Q-ToF tandem mass spectrometry (maXis 4G ETD, Bruker Daltonics).
ORGANISM(S): Bos taurus (Bovine) 
2018-04-05 | PXD005350 | Pride
Bovine Mitochondrion Protein Intact Top-down proteomics 
ProteomicsHuman HEK293T and Pig cardiac top-down proteomes from Bruker maXis II
These data, derived from PXD019368 (PMID 33231430) and PXD010825 (PMID 30988469) represent a test of deconvolution algorithms for top-down proteomics experiments on the Bruker maXis II Q-TOF. Three LC-MS/MS experiments are available from pig cardiac tissue in both raw .d directories and in deconvol...
ORGANISM(S): Sus Scrofa (ncbitaxon:9823) Homo Sapiens (ncbitaxon:9606) 
2022-04-13 | MSV000089252 | MassIVE
MetabolomicsLipidFrag: Improving reliability of in silico fragmentation of lipids and application to the Caenorhabditis elegans lipidome
Lipid identification is a major bottleneck in high-throughput lipidomics studies. We combined the in silico fragmentation tool MetFrag with LipidMaps lipid-class specific classifiers which calculate probabilities for lipid class assignments. The LipidFrag approach was then applied to MS/MS spectra o...
2017-03-09 | MTBLS291 | MetaboLights
ProteomicsBSA Standard Dimethyl labelling
BSA digest standards, MD and PS, maXis and ultraflex
ORGANISM(S): Bos Taurus (ncbitaxon:9913) 
2016-11-18 | MSV000080344 | MassIVE
MetabolomicsGNPS - SD Zoo - TheWilds - Maxis
Small molecule analysis of Rhino fecal extracts, standard methanol extraction. Data were acquired using a Bruker Maxis Impact MS and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.
ORGANISM(S): Ceratotherium Simum Simum (ncbitaxon:73337) 
2020-08-25 | MSV000086014 | GNPS
ProteomicsHuman dental calculus LC-MS/MS
The purpose of this study was to investigate oral microbiome and host proteins in archaeological human dental tissues using a shotgun proteomics approach. The research focuses on dental calculus (mineralized plaque), dentine, a carious lesion, and an alveolar bone abscess from the medieval site of D...
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) Ovis 
2014-01-29 | PXD000412 | Pride
Human Caries Ltq-orbitrap velos Cementum Maxis uhr-qq-tof Medieval Dentine Dental calculus Cattle Abscess Bone Dental plaque Q-exactive hybrid quadrupole orbitrap Sheep Archaeological Periodontitis 
MetabolomicsGNPS - SD Zoo - Rhino FMT - Maxis
Small molecule analysis of Rhino fecal extracts, standard methanol extraction. Pre and post FMT. Data were acquired using a Bruker Maxis Impact MS and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.
ORGANISM(S): Rhinoceros Unicornis (ncbitaxon:9809) 
2020-08-25 | MSV000086013 | GNPS
MetabolomicsGNPS - International Space Station Swab Testing - Maxis
Sampling swab test for ISS project. Data was acquired using a Bruker Maxis Impact and C18 RP-UHPLC using positive and negative polarity of LC-MS/MS. 12.5min Dual Swab gradient.
ORGANISM(S): Not Applicable 
2020-06-18 | MSV000085608 | GNPS
UnknownOptimisation of Milk Protein Top-Down Sequencing Using In-Source Collision-Induced Dissociation in the Maxis Quadrupole Time-of-Flight Mass Spectrometer.
Not available
S-EPMC6278275 | biostudies-literature
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