Narrow-bore lc - OmicsDI

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Proteomics (16)
Unknown (3)
Metabolomics (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (16)
Andropogon gerardi (16)
Bacteria (16)
Bartonella quintana JK 31 (16)
Canis lupus familiaris (16)
Cnidaria (16)
Ectopseudomonas oleovorans CECT 5344 (16)
Ensifer adhaerens (16)
Halictus scabiosae (16)
Human immunodeficiency virus 1 (16)
Mesocricetus auratus (16)
Miscanthus x giganteus (16)
Mus musculus (16)
Panicum virgatum (16)
Pseudomonas aeruginosa PA103 (16)
Pseudomonas aeruginosa SJTD-1 (16)
Rabies virus Nishigahara RCEH (16)
Rattus norvegicus (16)
Rattus rattus (16)
Rhodococcus jostii RHA1 (16)
Rhodopseudomonas palustris (16)
Schizosaccharomyces pombe 927 (16)
Sorghastrum nutans (16)
Staphylococcus aureus (16)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (16)
Streptococcus pneumoniae (16)
Streptomyces coelicolor A3(2) (16)
Synechocystis sp. PCC 6803 (16)
Tripsacum dactyloides (16)
Viruses (16)

Repository

pride (16)
MetaboLights (3)

Tissue

Cell culture (8)
Epithelial cell (3)
Bone marrow (1)
Brain (1)
Fibroblast (1)
HeLa cell (1)
Liver (1)
Oocyte (1)

Disease

Cervix carcinoma (3)
Breast cancer (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (9)
Top-down proteomics (4)
Mass spectrometry (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
MSE (1)

Instrument Platform

Agilent 6545 QTOF (1)
Agilent 6520 QTOF (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2019 (5)
2024 (3)
2020 (3)
2026 (2)
2022 (1)
2018 (1)
2025 (1)
2023 (1)
2021 (1)
2017 (1)

CHEBI ID

CHEBI:3519 (1)
CHEBI:6427 (1)
CHEBI:89855 (1)
CHEBI:89159 (1)
CHEBI:81874 (1)
CHEBI:89210 (1)
CHEBI:1220 (1)
CHEBI:85102 (1)
CHEBI:47395 (1)
CHEBI:6111 (1)
CHEBI:81085 (1)
CHEBI:3303 (1)
CHEBI:74218 (1)
CHEBI:86516 (1)
CHEBI:90600 (1)
CHEBI:29631 (1)
CHEBI:6658 (1)
CHEBI:3339 (1)
CHEBI:31961 (1)
CHEBI:82005 (1)
CHEBI:1790 (1)
CHEBI:15569 (1)
CHEBI:34897 (1)
CHEBI:80779 (1)
CHEBI:190293 (1)
CHEBI:63709 (1)
CHEBI:190292 (1)
CHEBI:9612 (1)
CHEBI:7659 (1)
CHEBI:18328 (1)

Metabolite Name

Lys Asp Lys (1)
ADP-ribose 1<U+2033>-2<U+2033> cyclic phosphate (1)
Arg Gln (1)
1,2-Propanediol, 3-[[2-(2-methoxyphenoxy)ethyl]amino] (1)
INOSINE 5'-TRIPHOSPHATE (1)
BESTATIN (1)
Celapanine (1)
Trimethoprim 1-N-oxide (1)
2',4'-Dihydroxy-6'-methoxy-3'-(2-hydroxybenzyl)-5'-(3 x 2-hydroxybenzyl)dihydrochalcone (1)
Threo-Dihydrobupropion (1)
His-Asp-OH (1)
Leuprolide (1)
Ala Gly Trp (1)
Asp-Ser-OH (1)
Trp Asn Trp (1)
Gln His Gly (1)
Buprenorphine 3-O-glucuronide (1)
Ile Lys Gln (1)
Val Lys Ile (1)
C16-OH Sulfatide (1)
Gln Lys Gly (1)
Mytiloxanthinone (1)
Gly Phe Leu (1)
Val Ser Pro (1)
Asp Ser Asp (1)
Ile Val Asp (1)
LYSO PC(18:1) (1)
Tyr Arg Tyr (1)
Alpha-D-Manp-(1 - 2)-a-D-Manp-(1 - 2)-a-D-Manp-(1 - 3)-b-D-Manp-(1 - 4)-D-GlcNAcp (1)
13(S)-HODE cholesteryl ester (1)

Release Date

2026 (1)
2020 (1)
2018 (1)

Lab affiliation

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (3)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Center of Reproductive Medicine, Huai’an Maternity and Child Health Care Hospital, Huai’an, 223002, P.R. China; State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, 210029, P.R. China (1)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84604 (1)
Department of Molecular Pathology and Biology, Faculty of Military Health Sciences, University of Defence, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic (1)
HSS Research Institute (1)
Immunology Program, Sloan Kettering Institute, New York, NY, USA. (1)
Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA (1)
School of Laboratory Medicine, Xinxiang Medical University, Xinxiang, China (1)
State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, China (1)
University of Illinois Urbana-Champaign (1)

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Improved Single Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry

we report on improved single-cell proteome coverage through the combination of the previously developed Nanodroplet Processing in One Pot for Trace Samples (nanoPOTS) platform with further miniaturization of liquid chromatography (LC) separations and implementation of an ultrasensitive latest-genera...

ORGANISM(S): Homo sapiens (Human)

2020-02-26 | PXD016921 | Pride

Eclipse Narrow-bore lc Single cell

Improved sensitivity of ultra-low flow LC-MS-based proteomic profiling of limited samples using monolithic capillary columns and FAIMS technology

In this work, we pioneered a combination of ultra-low flow (ULF) high-efficiency ultra-narrow bore monolithic LC columns coupled to MS via a high-field asymmetric waveform ion mobility spectrometry (FAIMS) interface to evaluate the potential applicability for high sensitivity, robust and reproducibl...

ORGANISM(S): Homo sapiens (Human)

2021-01-10 | PXD020669 | Pride

Faims Lc-ms Proteomic analysis Ultra-low flow lc Monolithic column

Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry.

Not available

S-EPMC7550239 | biostudies-literature

Integrated Biomimetic 2D-LC and Permeapad^® Assay for Profiling the Transdermal Diffusion of Pharmaceutical Compounds.

Not available

S-EPMC12843750 | biostudies-literature

Validation and implementation of liquid chromatographic-mass spectrometric (LC-MS) methods for the quantification of tenofovir prodrugs.

Not available

S-EPMC5835418 | biostudies-literature

High-flow LC-MS/MS analyses - Conventional-Flow Liquid Chromatography-Mass Spectrometry for Exploratory Bottom-Up Proteomic Analyses

The major objective of our study was to find out what are the extra costs and what optimization and adjustment steps of a high-flow LC-MS system have to be undertaken to identify a comparable number of proteins as on a nanoLC-MS system.

ORGANISM(S): Homo sapiens (Human)

2019-11-07 | PXD005481 | Pride

Microbore column Hela High-flow Narrow-bore column

Chinese giant salamander liver LC-MS/MS

Chinese giant salamander Andrias davidianus has strong tolerance to starvation. Here, a high-throughput proteomic analysis was carried out on liver samples obtained from the A. davidianus after 3, 7 and 11 months of fasting.s a result, the expression levels of 364 proteins were significantly changed...

ORGANISM(S): Andrias davidianus

2020-01-17 | PXD014924 | Pride

Chinese giant salamander Fasting Liver Lc-ms/ms

Probing molecular diversity of brain cells with chemically modified aptamers

We developed a volumetric correlated light and electron microscopy (CLEM) approach that uses slow off-rate modified aptamers (SOMAmers) for fluorescence labeling of cells in ultrastructurally reconstructable electron micrographs. The small size of aptamers enables intracellular labeling in fixed bra...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2026-04-17 | PXD075602 | Pride

Neuroscience Pulldown ms

Proteomic-based identification of oocyte maturation-related proteins in mouse GV oocytes

In this study, we applied 1D SDS-PAGE and RP-LC-MS/MS to investigate the proteins stored in GV mouse oocytes. This high-performance strategy allowed us to define a set of 1405 different mouse GV oocyte proteins. It is confirmed that this study will help us to understand the diverse biological proces...

ORGANISM(S): Mus musculus (Mouse)

2020-09-17 | PXD014314 | Pride

Mouse Gv oocytes Lc-ms/ms

Phospho-Proteome Analysis of ROCK1 Conditional Knock-Out (ROCK1cKO) Mouse B-Cells under various in vitro stimulation conditions by LC-MS/MS

To better delineate how ROCK1 controls the biochemical state of activated B cells, we next conducted a phospho-proteomic analysis. In vitro stimulated WT and CD23-Rock1 B cells were harvested, subjected to pS/pT TMT and total proteome TMT, and results analyzed by Proteome Discoverer.

ORGANISM(S): Mus musculus (Mouse)

2025-05-07 | PXD059659 | Pride

Stimulation conditions Mouse primary b-cells Rock1cko Lc-ms/ms

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22 Results

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