Orbitrapxl - OmicsDI

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Proteomics (55)
Unknown (2)

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Andropogon gerardi (50)
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Canis lupus familiaris (50)
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Human alphaherpesvirus 1 strain 17 (50)
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Synechocystis sp. PCC 6803 (50)
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Repository

pride (50)
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Mass Spectrometry (50)
Shotgun proteomics (30)
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Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (4)
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Instrument Platform

LTQ Orbitrap XL (3)
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Lab affiliation

Wageningen University (16)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (2)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (2)
Protim Irset Inserm U1085 (2)
1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (1)
Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Biochemistry and Molecular Biology, The Institute for Medical Research Israel-Canada (IMRIC). School of Medicine. The Hebrew University of Jerusalem, Israel. (1)
Chemistry (1)
Dairy Science & Technology, Food Quality & Design group, Wageningen University & Research, Wageningen, The Netherlands (1)
Department of Biology, Technion-Israel Institute of Technology (1)
Department of Entomology and Plant Pathology, 127 Noble Research Center, Oklahoma State University, Stillwater, Oklahoma, USA, 74078 (1)
Department of Pathology and Laboratory Medicine University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA (1)
Department of Pathology, Microbiology, and Immunology Vanderbilt University School of Medicine Nashville, TN 37232 USA (1)
Department of Plant & Microbial Biology, University of Minnesota,St. Paul, MN, USA (1)
Experimental Ophthalmology Ophthalmology University Medical Center Mainz Germany (1)
Experimental Ophthalmology, Department of Ophthalmology, Mainz, Rheinland-Pfalz, Germany (1)
Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel (1)
Helmholtz Zentrum München, Neuherberg, Germany (1)
Helmholtz Zentrum München, Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany (1)
King's BHF Centre of Research Excellence, King's College London, London, UK (1)
Medical Protein Chemistry (1)
Professor Department of Chemical & Biological Engineering, Biomedical Engineering and Clinical & Translational Research Center University at Buffalo State University of New York (1)
Proteome Center Tuebingen (1)
Protim - Irset – Inserm U1085 Campus de Beaulieu, Rennes, France (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Ingolstädter Landstr.1 85764 Neuherberg, Germany (1)
Research Unit Protein Science Helmholtz Center Munich Germany (1)
Research Unit Protein Science Helmholtz Zentrum Muenchen German Research Center for Environmental Health (GmbH) D-85764 Neuherberg Germany Ph.: +49-89-3187-3941 Fax: +49-89-3187-4426 (1)
Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany (1)
Research Unit Protein Science, Helmholtz Center Munich, Research Center for Environmental Health (GmbH), Neuherberg,Germany (1)
Research Unit Protein Science, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany (1)

Modification

15.994915 (2)
57.021464 (2)
-17.026549 (1)
42.010565 (1)
45.029395 (1)

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Diethylation

In this study we compared diethylation using acetaldehyde-13C2/13C1 and acetaldehyde-2H4/1H4. Light and heavy labeled samples were combined in a ratio of 1:1 and analyzed on a LC-MSMS system using an OrbitrapXL. We analyzed ten techical replicates of each labeling version (13C/12C and 2H/1H) and com...

ORGANISM(S): Homo sapiens (Human)

2022-03-02 | PXD001256 | Pride

Blumeria graminis f.sp. hordei DH14 proteogenomics 2010

ACN_BlumORF_20101027_F009873 In solution tryptic digest of ACN fractions and crude extracts of sporulating hyphae nRPLC 130 min 2-32%ACN and 20min 32-48%ACN gradients online with nESI LTQ OrbitrapXL MSMS (CID) db: Blumeria ORF db (contigs) Mascot search 99% confidence

ORGANISM(S): Blumeria graminis f. sp. hordei DH14

2013-07-09 | PRD000366 | Pride

Large scale phosphoprotein profiling to unravel Drosophila cold acclimation regulatory mechanisms

In this study we compared the phosphoproteome of control and cold acclimated Drosophila melanogaster in order to unravel the cold acclimation regulation mechanisms. For this prurpose we enriched phosphopeptides from each sample using a sequential elution from IMAC strategy (SIMAC) and analyzed them ...

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2017-05-16 | PXD005311 | Pride

Acclimation Simac Fruit fly Phosphorylation network

Interaction of SARS-CoV-2 nucleocapsid protein and human RNA helicases DDX1 and DDX3X modulates their activities on double-stranded RNA

The proteomic analysis described in this study was performed on A549 cells transfected with an empty vector and with SARS-CoV-2 N protein by means of a label free shotgun platform, consisting of an Eksigent nanoLC-Ultra 2D System configured in trap-elute mode coupled to a LTQ-OrbitrapXL mass spectro...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-12-31 | MSV000090979 | MassIVE

Proteomic profiling of cellular steatosis with concomitant oxidative stress in vitro.

Not available

S-EPMC4930558 | biostudies-literature

E. coli expressed SECRET AGENT O-GlcNAc modifies threonine 829 of GIGANTEA

The Arabidopsis thaliana glycosyl transferases SPINDLY (SPY) and SECRET AGENT (SEC) modify nuclear and cytosolic proteins with O-linked fucose or O-linked Nacetylglucosamine (O-GlcNAc), respectively. O-fucose and O-GlcNAc modifications can occur at the same sites. SPY interacts physically and geneti...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-07-15 | PXD053909 | Pride

Arabidopsis thaliana Gigantea Protein modification O-glcnac E. coli

A comprehensive proteomic view of responses of A549 type II alveolar epithelial cells to human respiratory syncytial virus infection.

Not available

S-EPMC4256481 | biostudies-literature

DNA mismatch repair activity of MutLalpha is regulated by CK2-dependent phosphorylation of MLH1

Mass spectrometry based PTM phosphorylation analysis to study regulation mechanism of MUTL alpha, a heterodimer consisting of MLH1 and PMS2 and a key player in DNA mismatch repair (MMR). It could be demonstrated that phosphorylation of MLH1 by Casein Kinase II (CK2) at amino acid position 477 can sw...

ORGANISM(S): Homo sapiens (Human)

2018-08-29 | PXD009026 | Pride

Hek293t cells Phosphorylation Immunoprecipitation Mutl alpha Lc-ms/ms

RNAi-mediated downregulation of poplar plasma membrane intrinsic proteins (PIPs) changes plasma membrane proteome composition and affects leaf physiology

Plasma membrane intrinsic proteins (PIPs) are one subfamily of aquaporins that mediate the transmembrane transport of water. To reveal their function in poplar, we generated transgenic poplar plants in which the translation of PIP genes was downregulated by RNA interference investigated these plants...

ORGANISM(S): Populus canescens (Grey poplar) (Populus tremula x Populus alba)

2015-08-10 | PXD002544 | Pride

Plasma membrane intrinsic protein populus × canescens plasma membrane proteomics photosynthesis stomatal movement Aquaporin pip

Proteomic profiling reveals central role of STAT signaling during retinal degeneration in the rd10 mouse model

The rd10 mouse is a model of retinitis pigmentosa characterized by the dysfunction of a rod-photoreceptor-specific phosphodiesterase. Compared to the rd1 mouse, retinal degeneration in the rd10 mouse begins later in age with a milder phenotype, making it ideal for investigating cell death and neurop...

ORGANISM(S): Mus musculus (Mouse)

2016-03-21 | PXD002584 | Pride

Label-free mass spectrometry phospho-stat retinal müller glial cells

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