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ProteomicsPhospho heavy-labeled-spiketide FAIMS stepped-CV DDA (pHASED) provides real-time phosphoproteomics data to aid in cancer drug selection
Global high-throughput phosphoproteomic profiling is increasingly being applied to cancer specimens as a means to identify the oncogenic signaling cascades responsible for promoting disease initiation and disease progression; pathways that are often invisible to genomics analysis. Hence, phosphoprot...
ORGANISM(S): Mus musculus (Mouse) 
2023-02-24 | PXD037227 | Pride
Cancer Phased Clinical phosphoproteomics Combination therapy Phosphoproteomics Resistance Atm Acute myeloid leukemia Drug targets Oncogenic signaling 
TranscriptomicsGenome-wide analysis of leafbladeless1-regulated and phased small RNAs provides new insights into the tas3 pathway in maize-
Maize LEAFBLADELESS1 (LBL1) and Arabidopsis SUPPRESSOR OF GENE SILENCING3 (SGS3) play orthologous roles in the biogenesis of 21 nucleotide trans-acting short-interfering RNAs (tasiRNAs). The phenotypes conditioned by mutation of lbl1 and SGS3 are, however, strikingly different, suggesting that the a...
ORGANISM(S): Zea mays 
2014-11-20 | E-GEOD-50557 | biostudies-arrayexpress
GenomicsPhased epigenomics and methylation inheritance in a historical Vitis vinifera hybrid
Phased Vitis epigenomics
PRJEB101820 | ENA
GenomicsChromosome-phased assemblies for the aphid Aphis fabae
Chromosome-phased assemblies for the aphid Aphis fabae
PRJEB108781 | ENA
GenomicsPhased cynomolgus macaque assembly
High-quality phased assembly of the cynomolgus macaque genome
PRJEB37906 | ENA
GenomicsPhased whole genome sequencing of 10 melanoma samples
We have sequenced 10 melanoma samples using 10X linked reads technology to obtain phased whole genome sequence data. Using this data, we created diploid personalized genomes for each sample and aligned functional genomics data obtained from the same samples in order to find allele specific events (s...
EGAS00001004136 | EGA
GenomicsReads for Chromosome-phased assemblies for the aphid Aphis fabae
Reads for Chromosome-phased assemblies of the aphid Aphis fabae
PRJEB113853 | ENA
ProteomicsMulti-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency
Pluripotency is highly dynamic and progresses through a continuum of pluripotent stem-cell states. The two states that bookend the pluripotency continuum, naïve and primed, are well characterized, but our understanding of the intermediate states and transitions between them remain incomplete. Here, ...
ORGANISM(S): Mus musculus (Mouse) 
2019-05-07 | PXD010621 | Pride
Stem cell Post-translational modification Differentiation Phosphoproteomics Embryonic Epilc Proteomics Pluripotency Dynamic Signal transduction Mass spectrometry Phosphorylation Easyphos Mesc 
GenomicsAlternate assembly for Chromosome-phased assemblies of the aphid Aphis fabae
Alternate assembly for Chromosome-phased assemblies of the aphid Aphis fabae
PRJEB108782 | ENA
GenomicsAccessory genomes for Chromosome-phased assemblies of the aphid Aphis fabae
Accessory genomes for Chromosome-phased assemblies of the aphid Aphis fabae
PRJEB108780 | ENA
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