Post Laura L - OmicsDI

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Transcriptomics (142)
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biostudies-arrayexpress (156)
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2010 (20)
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CHEBI ID

CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:17568 (3)
CHEBI:30769 (3)
CHEBI:14314 (2)
CHEBI:15422 (2)
CHEBI:15428 (2)
CHEBI:15713 (2)
CHEBI:15891 (2)
CHEBI:15996 (2)
CHEBI:16010 (2)
CHEBI:16040 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16643 (2)
CHEBI:16761 (2)
CHEBI:16857 (2)
CHEBI:16865 (2)
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CHEBI:17202 (2)
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CHEBI:17552 (2)
CHEBI:17659 (2)
CHEBI:17677 (2)
CHEBI:17821 (2)
CHEBI:17822 (2)
CHEBI:17981 (2)
CHEBI:17992 (2)

Metabolite Name

ADP (2)
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IsPrivate

False (2)

Study type

Transcription profiling by array (82)
RNA-seq of coding RNA (15)
ChIP-seq (12)
MicroRNA profiling by array (10)
RNA-seq of coding RNA from single cells (10)
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Release Date

2010 (20)
2013 (17)
2012 (17)
2011 (16)
2026 (15)
2021 (12)
2015 (12)
2014 (12)
2008 (10)
2022 (8)
2016 (8)
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2009 (5)
2005 (5)
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2018 (4)
2020 (3)
2019 (3)
2007 (3)
2017 (2)

Lab affiliation

David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Department of Morphology, Institute of Biosciences of Botucatu, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil. (1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
Institute for Neurosciences of Montpellier, Univ Montpellier, INSERM, Montpellier, France (1)
ProGenTomics Laboratory of Pharmaceutical Biotechnology, Ghent University, Belgium (1)
Professor Warren S Alexander The Walter and Eliza Hall Institute of Medical Research Theme Leader, Cancer Research and Treatments Laboratory Head, Blood Cells and Blood Cancer Division WEHI Professor of Medical Biology Honorary Professor, Department of Medical Biology, University of Melbourne (1)
Radiation Oncology Department Weill Cornell Medicine College 1300 York Avenue, NY, NY 10065 (1)
The Walter and Eliza Hall institute of Medical Research, Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne (1)

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Data for: A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls

Histone proteomics from 5 human cell lines, discussed in publication: "A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls". Further explanation of data types, methods, and analysis are available in Data Explanation document in...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000084298 | MassIVE

Distinguishing post-translational modifications in dominantly inherited FTD: FTLD-TDP Type A (GRN) versus Type B (C9orf72)

Frontotemporal dementias are neuropathologically characterized by frontotemporal lobar degeneration (FTLD). Intraneuronal inclusions of transactive response DNA-binding protein 43 kDa (TDP-43) are the defining pathologic hallmark of approximately half of the FTLD cases, being referred to as FTLD-TDP...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-04-12 | MSV000089242 | MassIVE

Cho_NFATC2IP_timsTOFPro2_P124_VS15

This dataset consists of 4 raw MS files and associated peak lists and results files, acquired on a Bruker timsTOF Pro 2 operated in Data Dependent Acquisition mode. Samples were generated by Tiffany Cho. Affinity purification was performed by Tiffany Cho and Laura McGary. Mass spectrometry acquisit...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-03-05 | MSV000094236 | MassIVE

Donor IFNL4 Genotype Is Associated with Early Post-Transplant Fibrosis in Recipients with Hepatitis C.

Not available

S-EPMC5119817 | biostudies-literature

Post reperfusion syndrome during liver transplantation: From pathophysiology to therapy and preventive strategies.

Not available

S-EPMC4721988 | biostudies-literature

RNA-seq of mouse intestinal adenoma organoids treated with pre- and post-exercise human serum

This experiment investigated transcriptomic responses of mouse intestinal adenoma organoids to circulating factors induced by acute exercise. Intestinal adenoma organoids derived from an Lgr5-creER;Apcfl/fl mouse model were cultured with 1% human serum collected immediately before or after a maximal...

ORGANISM(S): Mus musculus

2026-10-10 | E-MTAB-17712 | biostudies-arrayexpress

Phosphoproteomic analysis of UBQLN2 mutant cells

In the project “Phosphoproteomic analysis of UBQLN2 mutant cells” by Laura Strohm, Zehan Hu, Jörn Dengjel, and Christian Behrends eight sets of SILAC experiments were performed, two times four biological replicates, comparing proteome and phosphoproteome of control and UBQLN2 mutant, patient-derived...

ORGANISM(S): Homo sapiens (Human)

2022-06-28 | PXD029730 | Pride

Profiling histone post-translational modifications to identify signatures of epigenetic drug response in T-cell acute lymphoblastic leukemia

Epigenetic modifications are dynamic and reversible, making them attractive targets for therapeutic intervention in cancer. Although several epigenetic drugs (epidrugs) have been clinically approved, their application in T-cell acute lymphoblastic leukemia (T-ALL) remains limited, and predictive bio...

ORGANISM(S): Homo sapiens (Human)

2026-06-08 | PXD067935 | Pride

Histone post-translational modifications Lc-ms Pharmacoepigenetics Epigenetics T-all

A comprehensive microarray analysis of Enterococcus faecium in response to vancomycin in combination with the essential oil components carvacrol and cuminaldehyde

This study aims to determine the global gene expression in vancomycin resistant Enterococcus faecium (VRE) in response to a novel essential oil-vancomycin combination, and the individual components (vancomycin, carvacrol and cuminaldehyde) to help determine the mechanism of action of this antimicrob...

ORGANISM(S): Enterococcus faecium

2019-12-31 | E-MTAB-8072 | biostudies-arrayexpress

Decoding the molecular complexity governing corneal wound closure in vivo

The cornea is the transparent tissue on the anterior surface of the eye. It is notably composed of a squamous stratified epithelium that forms a barrier protecting the ocular chamber. As the cornea is avascular, the delivery of nutrients and growth factors, required for corneal physiology, is essent...

ORGANISM(S): Mus musculus (Mouse)

2025-11-10 | PXD061492 | Pride

Epithelium Proteomics Cornea Lacrimal gland Epitranscriptomics Tears Transcriptomics

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