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TranscriptomicsComparison between Estrogen receptor positive and Estrogen receptor negative breast cancer samples
Comparison between Estrogen receptor positive and Estrogen receptor negative breast cancer samples Keywords: breast cancer type comparison 152 unique breast cancer tissue sample are included in the analysis. The total mRNA has been labeled with Cy5 and then hybridized on a two color arrays against t...
ORGANISM(S): Homo sapiens 
2008-09-17 | E-GEOD-10510 | biostudies-arrayexpress
TranscriptomicsRenal Cell Carcinoma Differential Expression
We investigated the changes in gene expression accompanying the development and progression of kidney cancer using 31,500 element complementary DNA arrays. We measured expression profiles for paired neoplastic and non-cancerous renal epithelium samples from 37 individuals. Using an experimental desi...
ORGANISM(S): Homo sapiens 
2010-05-28 | E-GEOD-3 | biostudies-arrayexpress
ProteomicsA synthetically methylotrophic Escherichia coli as a chassis for bioproduction
Proteome characterization of three E. coli strains: a methanol-dependent strain (MEvo1-0) and two synthetically methylotrophic strains (MEcoli_ref_1, MEcoli_ref_2)
ORGANISM(S): Escherichia coli 
2024-02-08 | PXD046243 | Pride
Synthetic biology Metabolic engineering Synthetic methylotrophy Biotechnology E. coli 
TranscriptomicsTranscription profling of human neuroblastoma samples to construct, validate and evalute a gene expression based classification of outcome of treatment
This set of 320 profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2009-02-17 | E-TABM-38 | biostudies-arrayexpress
TranscriptomicsCASPAR survival analysis
This set of profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2008-12-31 | E-MTAB-16 | biostudies-arrayexpress
TranscriptomicsMAQC 2 color
This set of profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2010-11-01 | E-MTAB-161 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human heart with heart failure due to ischemic cardiomyopathy or dilated cardiomyopathy
End stage heart failure due to ischemic cardiomyopathy (ICM) and dilated cardiomyopathy (DCM) have similar characteristics, enlargement of the ventricles, relatively thin-walled ventricle, which leads to a limited contraction force and blood loading. Nevertheless, the response for present therapeuti...
ORGANISM(S): Homo sapiens 
2007-10-31 | E-CVDE-1 | biostudies-arrayexpress
ProteomicsEnhanced Media Optimize Bovine Myogenesis in 2D and 3D Models for Cultivated Meat Applications
Livestock farming and conventional meat production pose significant environmental, health, and animal welfare challenges. In seeking sustainable alternative solutions, cultivated meat technology typically utilizes differentiation of myogenic progenitor cells (MPCs) into muscle cells for in vitro mea...
ORGANISM(S): Bos taurus (Bovine) 
2025-07-24 | PXD051019 | Pride
Multiomics Cultivated meat Bovine 
ProteomicsCharacterization of stromal cells isolated from endometriotic lesions
Endometriosis shows significant lesion heterogeneity, but pathophysiological mechanisms leading to differences in clinical presentation are poorly understood. Here we utilized primary stromal cells from different types of endometriotic lesions to better understand the molecular mechanisms that lead ...
ORGANISM(S): Homo sapiens (Human) 
2025-12-15 | PXD066685 | Pride
Eutopic and ectopic endometrial cells Endometriosis Endometrioma Superficial endometriosis Endometrium Endometriotic stromal cells Homo sapiens Deep endometriosis 
ProteomicsDysregulated lipid metabolism and hypomyelination in postnatal peroxisome-deficient Pex2 knockout Zellweger mice
In the project “Dysregulated lipid metabolism and hypomyelination in postnatal peroxisome-deficient Pex2 knockout Zellweger mice” label-free mass spectrometry proteomics was used to study the proteome in different regions of the central nervous system of wild-type and peroxisome-deficient Pex2 knock...
ORGANISM(S): Mus musculus (Mouse) 
2026-01-28 | PXD063585 | Pride
Peroxisomes Brain Pex2 knockout mouse Cerebral cortex Cholesterol Cerebellum Cns Myelination Brainstem Zellweger syndrome Spinal cord Lc-ms/ms 
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