Proteoglycan - OmicsDI

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Organisms

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mouse gut metagenome (3)
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unidentified (1)

Repository

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Disease

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Fetal alcohol syndrome (1)
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Technology Type

Mass Spectrometry (66)
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Data-independent acquisition (3)
Gel-based experiment (3)
Illumina MiSeq (2)
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Illumina MiSeq, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Glycoproteomics (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (62)
NextSeq 500 (30)
Illumina NovaSeq X (24)
Illumina HiSeq 2500 (23)
NextSeq 550 (17)
NextSeq 2000 (15)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (10)
DNBSEQ-G400 (7)
Element AVITI (6)
NA (4)
Illumina MiSeq (4)
None (3)
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Maxwell 16 LEV-plant RNA kit (2)
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Ion Torrent Proton (2)
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Maxwell RSC instrument (1)
Maxwell RSC Instrument (1)
IPK PhenoSphere (1)
Agilent TapeStation (1)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)

Publication Date

2026 (121)
2025 (103)
2010 (80)
2014 (72)
2013 (72)
2011 (68)
2012 (59)
2015 (56)
2016 (53)
2008 (44)
2024 (35)
2009 (35)
2022 (31)
2023 (29)
2021 (28)
2018 (23)
2020 (20)
2019 (20)
2007 (14)
2017 (9)
2005 (5)
2006 (3)
2004 (2)

UNIPROT ID/AC

Q31KY1_SYNE7 (1)
Q31QN5_SYNE7 (1)
CLPP3_SYNE7 (1)
Q31N59_SYNE7 (1)
Q31MT9_SYNE7 (1)
Q31NF4_SYNE7 (1)
Q31QD2_SYNE7 (1)
Q31P79_SYNE7 (1)
Q31LN7_SYNE7 (1)
Q31K40_SYNE7 (1)
Q07948_SYNE7 (1)
RL15_SYNE7 (1)
Q31S56_SYNE7 (1)
Q31RT6_SYNE7 (1)
Q31PH3_SYNE7 (1)
Q31MJ5_SYNE7 (1)
Q31QX9_SYNE7 (1)
Q31R99_SYNE7 (1)
Q31MT8_SYNE7 (1)
P72547_SYNE7 (1)
Q31RJ4_SYNE7 (1)
Q31P78_SYNE7 (1)
Q31LN8_SYNE7 (1)
RL14_SYNE7 (1)
UVRC_SYNE7 (1)
Q79PF2_SYNE7 (1)
Q31S57_SYNE7 (1)
Q31RT7_SYNE7 (1)
Q31PH4_SYNE7 (1)
PSBH_SYNE7 (1)

CHEBI ID

CHEBI:139311 (1)
CHEBI:16284 (1)
CHEBI:28862 (1)
CHEBI:141586 (1)
CHEBI:8087 (1)
CHEBI:139312 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:15422 (1)

Metabolite Name

5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
PC-M5 (1)
3-O-Methylcoumestrol (1)
LysoPC(26:1(5Z)) (1)
Fonsecin B (1)
Isopentyl mercaptan (1)
4-(Methylthio)-1-butanol (1)
Tectorigenin 4'-sulfate (1)
PC(24:1(15Z)/22:4(7Z,10Z,13Z,16Z)) (1)
28-Norcyclomusalenone (1)
3-Methyl-2-butenal (1)
1-(4-Methoxyphenyl)-2-nitroethylene (1)
Benzenepropanenitrile (1)
1-(5-Methyl-2-thienyl)-1-propanone (1)
Hydroxyprolyl-Histidine (1)
4,5-Dimethyloxazole (1)
2,4-Dimethyloxazole (1)
3,4-Hexahydroxydiphenoylarabinose (1)
Garcinia lactone dibutyl ester (1)
Acetic anhydride (1)
Shinflavanone (1)
Pyrimidine (1)
L-2-Amino-5-hydroxypentanoic acid (1)
(R)-Dihydromaleimide (1)
Prolyl-Alanine (1)
Nervonyl carnitine (1)
DATP (1)
Imidazoleacetic acid riboside (1)
SM(d16:1/24:1(15Z)) (1)

First Public Date

2014 (28)
2026 (25)
2025 (22)
2024 (17)
2023 (10)
2022 (9)
2020 (8)
2018 (5)
2017 (4)
2021 (3)
2019 (3)
2015 (2)
2016 (1)
2013 (1)

Modification

N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (375)
RNA-seq of coding RNA (147)
ChIP-seq (43)
RNA-seq of coding RNA from single cells (22)
ATAC-seq (14)
RNA-seq of total RNA (14)
Comparative genomic hybridization by array (13)
DNA-seq (12)
ChIP-chip by tiling array (10)
Methylation profiling by high throughput sequencing (9)
Unknown experiment type (8)
Methylation profiling by array (8)
RNA-seq of non coding RNA (7)
Proteomic profiling by array (6)
Single nucleus RNA sequencing (5)
CUT&RUN (5)
Transcription profiling by tiling array (4)
Bisulfite-seq (4)
Hi-C (4)
Other (4)
MNase-seq (3)
Animal - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
RIP-seq (3)
MicroRNA profiling by array (3)
CUT&Tag (2)
Transcription profiling by RT-PCR (2)
Exome sequencing (2)
Transcription profiling by SAGE (1)

Release Date

2025 (204)
2021 (198)
2022 (187)
2023 (185)
2016 (171)
2020 (170)
2014 (158)
2015 (141)
2013 (135)
2012 (130)
2010 (127)
2018 (124)
2019 (123)
2024 (117)
2017 (117)
2026 (116)
2011 (109)
2009 (93)
2008 (76)
2007 (34)
2006 (28)
2005 (22)
2004 (8)
2002 (7)
2003 (6)
2000 (5)
1999 (5)
1998 (4)
1997 (2)
2001 (1)

Lab affiliation

King's College London (4)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
National Heart and Lung Institute, Imperial College London, London, UK (3)
Proteomics group, Ri.MED Foundation, Palermo, Italy (3)
Department of Pediatrics University of Maryland, School of Medicine (1)
King's BHF Centre of Research Excellence King's College London (London, UK) Contact 1: Prof Manuel Mayr (manuel.mayr@kcl.ac.uk) Contact 2: Dr Javier Barallobre-Barreiro (javier.barallobre-barreiro@kcl.ac.uk) (1)
Dr. Rolf M. Schwiete Osteoarthritis Research Unit, Department of Trauma Surgery and Orthopedics, University Hospital, Goethe University, Frankfurt, Germany (1)
Head Proteomics Core Facility Medical University of Vienna Clinical Department of Laboratory Medicine (1)
ARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, North Ryde, Sydney, NSW 2109, Australia. (1)
IMP - Research Institute of Molecular Pathology, IMBA - Institute of Molecular Biotechnology (1)
Department of Biochemical Sciences, School of Biosciences, Faculty of Health and Medical Sciences, Edward Jenner Building, University of Surrey (1)
Discovery Proteomics Facility, Oxford (1)
Centre de Recherche en Cancérologie de Marseille Inserm UMR1068, CNRS UMR7258, Aix-Marseille Université UM105,Institut Paoli-Calmettes 13273 MARSEILLE FRANCE (1)
Inst Cardiovasc & Metabolic Med (LICAMM), University of Leeds, Leeds, United Kingdom (1)
Department of Laboratory Medicine, Sahlgrenska academy, University of Gothenburg, Gothenburg, Sweden (1)
UCLOuvain, Pôle de Recherche en Physiopathologie de la Reproduction, Avenue Hippocrate, 54 Bte. B1.55.03 - 1200 Bruxelles, Belgique (1)
Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brasil. (1)
Department of Cellular Immunology, German Cancer Research Center Heidelberg, Germany (1)
Department of Pediatrics and Adolescent Medicine, Experimental Neonatology, Medical Faculty, University of Cologne, Cologne, Germany and Center for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany (1)
IMBA, Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Vienna, Austria; IMP, Institute for Molecular Pathology, Vienna, Austria (1)
Professor, Department of Laboratory Medicine,University of Gothenburg, Sweden (1)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK; (1)
McCaig institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, AB, Canada (1)
1 Department of Anaesthesiology, LMU University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany 2 Walter Brendel Center of Experimental Medicine, Research Unit Immune Function and Immune Metabolism, Ludwig-Maximilian-University (LMU), Munich, Germany (1)
University of Alabama at Birmingham, IRCP Heersink & CCC O'Neal Proteomics Shared Resource Facility (1)
Biomedical engineering, Lerner research institue, Cleveland Clinic, Cleveland, OH, USA (1)
Discovery Proteomics Facility (1)
i3S - Instituto de Investigacao e Inovacao em Saude, Universidade do Porto, Porto, Portugal. IPATIMUP - Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal. (1)
Urological Research Institute DiBit2, Scientific Institute San Raffaele Via Olgettina 60, 20132 Milan - Italy Tel: +39-02-2643.6351; Fax. +39-02-2643.5659 (1)
Professor, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska Academy at the University of Gothenburg, Gothenburg, Sweden (1)

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Transcription profiling of BALB/c mice genetically susceptible to proteoglycan-induced arthritis and spondylitis

BALB/c mice are susceptible to proteoglycan (PG) aggrecan-induced arthritis (PGIA), a murine model of rheumatoid arthritis (Glant,T.T. and Mikecz,K., Proteoglycan aggrecan-induced arthritis. A murine autoimmune model of rheumatoid arthritis. Methods Mol.Med. 2004. 102: 313-338.). However, there are...

ORGANISM(S): Mus musculus

2009-02-21 | E-GEOD-13730 | biostudies-arrayexpress

Identification of spondylarthropathy-specific genes in BALB/c mice with proteoglycan-induced spondylitis (PGIS)

BALB/c mice develop peripheral arthritis (PGIA) and spondyloarthropathy (PGIS) upon repeated intraperitoneal injections of human cartilage proteoglycan (PG) aggrecan. The aim of the present study was to identify spondylitis-specific genes by comparing intervertebral disc (IVD) RNA samples from spond...

ORGANISM(S): Mus musculus

2014-04-01 | E-GEOD-13782 | biostudies-arrayexpress

Enduring Histone Methylation Changes at Proteoglycan Network Genes following Ethanol Exposure

PRJNA483750 | ENA

Proteoglycan sequencing - Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides

Proteoglycans are distributed in all animal tissues and play critical, multifaceted, physiological roles. Expressed in a spatially- and temporally-regulated manner, these molecules regulate interactions among growth factors and cell surface receptors and play key roles in basement membranes and oth...

ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human)

2018-05-22 | PXD008855 | Pride

BALB/c mice genetically susceptible to proteoglycan-induced arthritis and spondylitis

ORGANISM(S): Mus musculus

2009-02-15 | GSE13730 | GEO

Chemical editing of proteoglycan architecture.

Not available

S-EPMC9205196 | biostudies-literature

Proteoglycan profiling of human, rat and mouse insulin-secreting cells

Proteoglycans (PGs) are proteins with glycosaminoglycan (GAG) chains, such as chondroitin sulfate (CS) or heparan sulfate (HS), attached to serine residues. We have earlier shown that prohormones can carry CS, thus, constituting a novel class of PGs. The mapping of GAG modifications of proteins in e...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) Rattus norvegicus (Rat)

2022-02-16 | PXD024230 | Pride

Glycosaminoglycan Insulinoma islet cells Chromogranin-a Insulin Proteoglycan

VISTA is an activating receptor that binds the proteoglycan Syndecan-2 on monocytes.

PRJNA726958 | ENA

Decorin protects cardiac myocytes against simulated ischemia/reperfusion injury

Primary cardiac myocytes isolated from neonatal Wistar rats were cultured and simulated ischemia/reperfusion injury were conducted on them in the presence or absence of decorin. Decorin is a small leucin-rich proteoglycan, which has a cardiocytoprotective effect. The underlaying mechanism of this ca...

ORGANISM(S): Rattus norvegicus

2020-12-31 | E-MTAB-9325 | biostudies-arrayexpress

Salmon nasal cartilage proteoglycan up-regulates Listeria monocytogenese-mediated immune response in mice

The proteomic analysis of liver samples from mice administered proteoglycan (PG) for 9 days or untreated control mice. Liver samples from mice administered PG for 9 days or untreated control mice (n = 6 per group) were homogenized in PBS. The proteins were precipitated using acetone. The supernatant...

ORGANISM(S): Mus Musculus (mouse)

2026-03-05 | PXD061495 | JPOST Repository

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