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ProteomicsLarge-scale proteome characterization of the cassava root
Cassava is the most important root crop in the tropics but rapid post-harvest physiological root deterioration (PPD) is a major constraint to commercial cassava production. We used label-free quantitative proteomics to generate an extensive cassava root and PPD proteome. Over 2400 unique proteins we...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2014-06-03 | PXD000587 | Pride
Cassava Proteomics Root Post-harvest deterioration 
TranscriptomicsMapping Gene Activity of Arabidopsis Root Hairs
We provide an atlas of gene and protein expression in Arabidopsis root hair cells, generated by paired-end RNA-seq and LC/MS-MS analysis from protoplasts that carry the root hair-specific pEXP7-GFP reporter construct. In total, transcripts from 23,234 genes were detected in root hairs; those related...
ORGANISM(S): Arabidopsis thaliana 
2012-12-04 | E-MTAB-4375 | biostudies-arrayexpress
ProteomicsComparative Transcriptomics and Proteomics on Pi Depleted Arabidopsis Roots
Plant adaptation to limited phosphate (Pi) availability comprises a wide range of strategies to conserve and remobilize internal Pi stores and to enhance Pi acquisition. Vigorous restructuring of root system architecture provides a developmental strategy for topsoil exploration and Pi scavenging. Ch...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-05-06 | PXD003449 | Pride
Arabidopsis Phosphate Root Proteomics 
ProteomicsEvolution of the senescence-related proteome in rapeseed roots in response to nitrogen deficiency
Senescence related markers have been widely studied in leaves in many plant species. Root senescence is more difficult to characterize. Here we analyse the evolution of rapeseed root proteome during the reproductive stage when monocarpic senescence and grain filling occur. We compare this evolution ...
ORGANISM(S): Brassica napus (Rape) 
2025-05-06 | PXD050894 | Pride
Rapeseed Lateral roots Nitrogen Root senescence Proteases Taproot 
ProteomicsProteomics of cassava storage roots before and after shoot pruning
Cassava (Manihot esculenta Crantz) is a food security crop for approximately 800 million people, primarily in developing economies. Cassava root yield is determined by the allocation of photoassimilated carbon within the plant, yet there is limited molecular and biochemical information about source-...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2026-04-01 | PXD045690 | Pride
Manihot esculenta Storage roots Pruning Cassava 
ProteomicsProteomics and proteogenomics analysis of sweet potato (Ipomoea batatas) leaf and root
Two complementary protein extraction methodologies coupled with an automated proteomic platform were employed to analyze tissue-specific proteomes and characterize biological and metabolic processes in sweet potato. A total of 74,255 peptides corresponding to 4,321 nonredundant proteins were success...
ORGANISM(S): Ipomoea batatas 
2019-05-30 | PXD012999 | Pride
Proteogenomics Sweet potato Storage root proteome Leaf proteome Lc-ms/ms 
UnknownRNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.).
Not available
S-EPMC6458706 | biostudies-literature
ProteomicsEfficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes
Cassava’s storage roots represent one of the most important sources of nutritional carbohydrates worldwide. Particularly, smallholder farmers in Sub-Saharan Africa depend on this crop plant, where resilient and yield-improved varieties are of vital importance to support steadily increasing populatio...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2023-06-21 | PXD038813 | Pride
Cassava 
UnknownArabidopsis root lipid droplets are hubs for membrane homeostasis under heat stress, and triterpenoid synthesis and storage.
Not available
S-EPMC12712439 | biostudies-literature
ProteomicsProteomic analysis of the role of RALF34 small signaling peptides in the regulation of cucumber (Cucumis sativus) root development
To elucidate the functional role of the small signaling peptide RALF34 in the parental root meristem and its role in lateral root initiation, we studied changes in Cucumis sativus proteome during CsRALF34 gene overexpression. Composite plants with transgenic root systems carrying the construct for C...
ORGANISM(S): Cucumis sativus 
2023-05-10 | PXD037725 | Pride
Lateral root initiation Csralf34 Ralf34 Cucumber Proteome Cucumis sativus 
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