Sort   by:  
 Page size 
MetabolomicsSuboxic DOM is bioavailable to surface prokaryotes in a simulated overturn of an oxygen minimum zone, Devil’s Hole, Bermuda
Oxygen minimum zones (OMZs) are expanding due to increased sea surface temperatures, subsequent increased oxygen demand through respiration, reduced oxygen solubility, and thermal stratification driven in part by anthropogenic climate change. Devil's Hole, Bermuda is a model ecosystem to study OMZ m...
2024-02-27 | MTBLS8122 | MetaboLights
MetabolomicsNano-Kinetic Implant Surface Mediates Osteo-Antibacterial Synergy through Electromagnetic-Mechanical Coupling
This untargeted LC-MS/MS metabolomics study investigates metabolic differences between laboratory reference Staphylococcus aureus and periprosthetic implant-associated Staphylococcus aureus in bacterial suspension samples associated with implant surface lavage. The metabolomics dataset forms part of...
2026-08-28 | MTBLS15301 | MetaboLights
MetabolomicsA multi-omics approach reveals functions of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees
Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved proteins that are involved in membrane trafficking. An integrated approach was taken to elucidate function of SCAMPs in wood formation of Populus trees. The metabolomics analyses were performed in woody tissues of transgeni...
2018-01-08 | MTBLS478 | MetaboLights
TranscriptomicsSurface sensing in Vibrio parahaemolyticus triggers a programme of gene expression that promotes colonization and virulence
Vibrio parahaemolyticus senses surfaces via impeded rotation of its polar flagellum. We have exploited this surface-sensing mechanism to trick the organism into thinking it is on a surface when it is growing in liquid. This facilitated studies of global gene expression in a way that avoided many of ...
ORGANISM(S): Vibrio parahaemolyticus 
2010-12-15 | E-GEOD-18763 | biostudies-arrayexpress
TranscriptomicsUstilago maydis gene expression after growth on hydrophobic surface plus/minus hydroxy fatty acids
Infection-related development of phytopathogenic fungi is initiated by sensing and responding to plant surface cues. This response results in the formation of specialized infection structures, so-called appressoria. To unravel the program inducing appressoria in the biotrophic smut fungus Ustilago m...
ORGANISM(S): Ustilago maydis 
2014-07-23 | E-GEOD-53947 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Streptomyces coelicolor mutant unable to erect aerial hyphae identifies a previously unknown layer of erial mycelium surface proteins (the "chaplins")
The filamentous bacterium Streptomyces coelicolor differentiates by forming specialized, spore-bearing aerial hyphae that grow into the air. Using microarrays, we identified genes that are down-regulated in a mutant unable to erect aerial hyphae. Through this route, we identified a previously unkno...
ORGANISM(S): Streptomyces coelicolor 
2007-06-11 | E-SMDB-4093 | biostudies-arrayexpress
TranscriptomicsHIT: a new versatile protein array platform for multi-analyte phenotyping of surface molecules
We have developed a multi-analyte fluid-phase protein array technology termed high-throughput immunophenotyping using transcription (HIT). This method employs a panel of monoclonal antibodies, each tagged with a unique oligonucleotide sequence that serves as a molecular barcode. After staining a s...
ORGANISM(S): Homo sapiens 
2010-05-26 | E-GEOD-10665 | biostudies-arrayexpress
TranscriptomicsP. falciparum Complicated Malaria: Modulation and Connectivity between Exportome and Variant Surface Gene Families
In temperate and sub-tropical regions of Latin America, complicated malaria manifested as hepatic dysfunction or renal dysfunction is seen in all age groups. There has been a concerted focus on understanding the patho-physiological and molecular basis of complicated malaria in children, much less is...
ORGANISM(S): Plasmodium falciparum 
2015-07-07 | E-GEOD-59844 | biostudies-arrayexpress
ProteomicsSurface proteome of large extracellular vesicles
The extracellular vesicle (EV) surface proteome (surfaceome) acts as a fundamental signalling gateway by bridging intra-and extracellular signalling networks, dictates EVs’ capacity to communicate and interact with its the/their environment, and is a source of potential disease biomarkers and thera...
ORGANISM(S): Homo sapiens (Human) 
2021-11-17 | PXD026658 | Pride
Proteomics Extracellular vesicles Large extracellular vesicles Interactome Surface 
ProteomicsPneumococcal surface tryptic digestion
Surface digestion of living pneumococcal cells grown in different media that attempt to simulate different infection models (for example, in culture media containing the soluble secreted fraction orignated by the growth of macrophages and epithelial cells)
ORGANISM(S): Streptococcus pneumoniae 
2022-02-15 | PXD008885 | Pride
Surface proteins Surfomic Vaccine Streptococcus pneumoniae Trypsin 
Sort   by:  
 Page size