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UnknownComparison of protein expression ratios observed by sixplex and duplex TMT labeling method.
Not available
S-EPMC3751587 | biostudies-literature
ProteomicsStop trashing your spectra! Use a “Quantify then Identify” pipeline based on machine learning to maximize your isobaric tagging data
Being inspired by metabolomic data processing, we have developed a bioinformatic pipeline that optimizes the processing of mass spectral data obtained from isobaric Tandem Mass Tag (TMT) experiments. Our method focuses on the tandem mass spectral level by first quantifying and then identifying (QtI)...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2018-05-01 | PXD005206 | Pride
Plasma Isobaric tagging Tmt Human Lc-ms Csf 6-plex Orbitrap 
ProteomicsSkeletal muscle wt and OXPHOS inhibited 18 months-old mice treated with edaravone
Chronic skeletal muscle mitochondria dyshomeostasis drives tubular aggregate formation. TMT sixplex Isobaric Mass Tagging analysis was carried out in the CBMSO Protein Chemistry Facility (ProteoRed, PRB3-ISCIII and UAM University, Spain.
ORGANISM(S): Mus musculus (Mouse) 
2022-08-12 | PXD026722 | Pride
Soleus Oxphos Mouse skm Edaravone Tubular agregate myopathy 
ProteomicsSkeletal muscle wt and OXPHOS inhibited 18 months-old mice
TMT sixplex Isobaric Mass Tagging (TAM) analysis was carried out in the CBMSO Protein Chemistry Facility (ProteoRed, PRB3-ISCIII and UAM University, Spain. Chronic skeletal muscle mitochondria dyshomeostasis drives tubular aggregate formation.
ORGANISM(S): Mus musculus (Mouse) 
2022-08-12 | PXD026771 | Pride
Skeletal muscle soleus gastronecmius mice oxphos tubular agregate myopathy 
UnknownData for Tandem Mass Tag (TMT) proteomic analysis of the pancreas during the early phase of experimental pancreatitis.
Not available
S-EPMC6129721 | biostudies-literature
UnknownIsobaric mass tagging and triple quadrupole mass spectrometry to determine lipid biomarker candidates for Alzheimer's disease.
Not available
S-EPMC6903722 | biostudies-literature
UnknownRelative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms.
Not available
S-EPMC5606153 | biostudies-literature
ProteomicsTarget identification of CQ31, a selective activator of the CARD8 inflammasome
Target identification of CQ31 using the photoreactive diazirine-alkyne probe, CQ73.
ORGANISM(S): Homo sapiens (Human) 
2021-11-17 | PXD027707 | Pride
Pepd Xpnpep1 Cq31 Inflammasome Tmt-sixplex 
ProteomicsTMT-based milk and serum proteomics in subclincal and clinical bovine mastitis
Bovine mastitis, the infection of the mammary gland which leads to great health and economic challenges for dairy farmers is accompanied by dramatic changes in the milk proteome. In this study of naturally occurring mastitis not only have the changes in the milk proteome been quantified in subclini...
ORGANISM(S): Bos taurus (Bovine) 
2021-05-26 | PXD022595 | Pride
Mastitis Tmt Milk proteomics Bovine Serum proteomics 
ProteomicsTMT-based quantitative proteomics of plasma from chicken challenged with lipopolysaccharide endotoxin
The change in the plasma proteome in chicken (Gallus gallus) challenged with lipopolysaccharide (endotoxin) derived from E. coli was determined by relative quantitation using a TMT label-based approach. This study provides insights into different factors contributing to innate immune response to exp...
ORGANISM(S): Gallus gallus (Chicken) 
2018-08-20 | PXD009399 | Pride
Tmt Lipopolysaccharide endotoxin infection Plasma Chicken Quantitative proteomics 
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